BAC Information

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BAC

Clone NameMSMg01-104G09
Chromosome15 (Build37)
Map Location 69,500,208 - 69,633,501
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G09.T7 (MSMg01no104_g09.b1)MSMg01-104G09.TJ (MSMg01no104_g09.g1)
ACCAG319021AG319022
length719701
length of high quality
(start - end)		124 (163 - 286)609 (77 - 685)
definitionCHROMAT_FILE: MSMg01no104_g09.b1 PHD_FILE: MSMg01no104_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005CHROMAT_FILE: MSMg01no104_g09.g1 PHD_FILE: MSMg01no104_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,633,378 - 69,633,501)(69,500,208 - 69,500,816)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCAGGTATTCCCAAATCTGCATCTGGTTGTCTACAGTGACCTAACTGG
CATGTGCTCATAGCTACACTCCGTAAATCACAGAGTGCTCTAGATGTCTT
CTAAGTAAATGAATCATACTATGAATAACTCTACTCTCAAACCACTATTT
GAAGTGGCTATTGACTTAATGAAAATTAGTTCTCAGTATCCTGTATAACG
GTACCATTTCCTTTATAATCTTCATAGGTACTGCCCTGACGTCTCAAATG
GCCAGAGGTAAATAGTTTCCATAGCATGTGTGAGACTCTTCTCATTACTA
GAAATAACTCTTGCATCCCTACCCTCACCGATAATAAATCGTTTCCCAGA
GCACAAGTGCTTTTGACTCACATAAATATGTACTACATGTCATCCAACTG
ATCATGGTGCCATTGTTAGCATATTACAATATGAATAGAGCCCTCACATC
CTTCGATACACGTTTTAGCCAATGTCCTTCACCATTACATATTGTATTCA
TGTATGAAACCCTCAATTTCTTCATTTTAAATTCTATCAACCGTGTCATG
TTCCGCTCCTTCCCATATCTCATACATTCCCAAGTTTCTACTTTCCGTCC
CCATATCTCAAATCAACCATTGAACCCCCTAGTTTTTCAGATATATACGT
TGCCGCTTTTTTTCATGGT

NTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCCTACACAACAAAATTCAT
GAACCAGATTTTGCATCTTAAGATGATGAGGAAAATGGAGTTAAACTCAT
ATGTACATTCTAGGGGGAGTCTCCCACCTTCCCCCATGATTTTCAGGAGA
TAACAAAGTCTAATATTCTTTGTTATTCTAAGTGTGCCTTCTTCATCCAC
TGGTACCATTGAGATAAACTCAGCCATCCTAGGCTAATCAGCACAGGCTC
CATACATTCTGCACAACATTTTGCACATCTCCATCAGAGCTGGACAATAG
CCCCATGCAGAATTTTCTTCTCTACAGACACCAAGGTACTACAATTGGAC
ATGCAAACACACACTGAATAATCTCTACTATTTTATCAAATATTTTTTTT
CTCAATTATGCTGGAAACTATCCTACTCATGGCAAAATAAAGGTAAAATT
GGGCTTTTTGGTTTTAAAATGATCTTTCTCATGTAAATTTAGTCTCTTTT
GAGACAAGTTACAATTTAATAACACAGGCATCTTCCTAGGCTACTCTCAT
TCATCTCATTCACAGAGATCATCACAGGTTCTTGAAGGATTCCAATAAAA
ACTTAATTGTATATGGTTGCTTTGCTCTGACCTGTTTTATAATGTTTGTA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g09.b1 MSMg01no104_g09.b1 CHROMAT_FILE:
MSMg01no104_g09.b1 PHD_FILE: MSMg01no104_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:39 2005
         (124 letters)



>mm_chr15_69633178_69633701
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatactatgaataactctactctcaaaccactatttgaagtggctattgacttaatga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcagactatgaataactctactctcaaaccactatttgaagtggctattgacttaatga 265

                                                                       
Query: 61  aaattagttctcagtatcctgtataacggtaccatttcctttataatcttcataggtact 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 264 aaattagttctcagtatcctgtataaaggtaccatttcctttaaaatcttcataggtact 205

               
Query: 121 gccc 124
           ||||
Sbjct: 204 gccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no104_g09.g1 MSMg01no104_g09.g1 CHROMAT_FILE:
MSMg01no104_g09.g1 PHD_FILE: MSMg01no104_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:39 2005
         (609 letters)



>mm_chr15_69500008_69501016
          Length = 1009

 Score = 1178 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtcctacacaacaaaattcatgaaccagattttgcatcttaagatgatgaggaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcctacacaacaaaattcatgaaccagattttgcatcttaagatgatgaggaaaat 260

                                                                       
Query: 61  ggagttaaactcatatgtacattctagggggagtctcccaccttcccccatgattttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagttaaactcatatgtacattctagggggagtctcccaccttcccccatgattttcag 320

                                                                       
Query: 121 gagataacaaagtctaatattctttgttattctaagtgtgccttcttcatccactggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagataacaaagtctaatattctttgttattctaagtgtgccttcttcatccactggtac 380

                                                                       
Query: 181 cattgagataaactcagccatcctaggctaatcagcacaggctccatacattctgcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgagataaactcagccatcctaggctaatcagcacaggctccatacattctgcacaa 440

                                                                       
Query: 241 cattttgcacatctccatcagagctggacaatagccccatgcagaattttcttctctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattttgcacatctccatcagagctggacaatagccccatgcagaattttcttctctaca 500

                                                                       
Query: 301 gacaccaaggtactacaattggacatgcaaacacacactgaataatctctactattttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaccaaggtactacaattggacatgcaaacacacactgaataatctctactattttat 560

                                                                       
Query: 361 caaatattttttttctcaattatgctggaaactatcctactcatggcaaaataaaggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatattttttttctcaattatgctggaaactatcctactcatggcaaaataaaggtaa 620

                                                                       
Query: 421 aattgggctttttggttttaaaatgatctttctcatgtaaatttagtctcttttgagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattgggctttttggttttaaaatgatctttctcatgtaaatttagtctcttttgagaca 680

                                                                       
Query: 481 agttacaatttaataacacaggcatcttcctaggctactctcattcatctcattcacaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttacaatttaataacacaggcatcttcctaggctactctcattcatctcattcacaga 740

                                                                       
Query: 541 gatcatcacaggttcttgaaggattccaataaaaacttaattgtatatggttgctttgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatcatcacaggttcttgaaggattccaataaaaacttaattgtatatggttgctttgct 800

                    
Query: 601 ctgacctgt 609
           |||||||||
Sbjct: 801 ctgacctgt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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