Query= MSMg01no104_j13.b1 MSMg01no104_j13.b1 CHROMAT_FILE:
MSMg01no104_j13.b1 PHD_FILE: MSMg01no104_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:54 2005
(650 letters)
>mm_chr15_44269640_44270689
Length = 1050
Score = 1174 bits (607), Expect = 0.0
Identities = 640/657 (97%), Gaps = 11/657 (1%)
Strand = Plus / Plus
Query: 5 ggaattcactgaaacctc-accctttcacactcggtgttggaaacttaatacacttgttc 63
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 194 ggaattcactgaaacctccaccctttcacactcggtgttggaaacttaagacacttgttc 253
Query: 64 caggcctgcatgggcttgtatagtcatcactctatcttcttttatagtgggaaagaagac 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caggcctgcatgggctagtatagtcatcactctatcttcttttatagtgggaaagaagac 313
Query: 124 ccaactaaatcatttatacaatcactttaggcattacaagtgtatcattggttaagcaat 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccaactaaatcatttatacagtcactttaggcattacaagtgtatcattggttaagcaat 373
Query: 184 gccaagccagggactggttggtaactggatataacacttacataacttgatagaaaggtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 374 gccaagccagggactggttggtaactggatataacacttacataacttgatagaaagttc 433
Query: 244 cacccaacacaagagaacggtgacagctgctcaatagctggtgttggaattgatcctgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cacccaacacaagagaacggtgacagctgctcaatagctggtgttggaattgatcctgtg 493
Query: 304 tgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacacatgcctgc 353
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacacatgcctgc 553
Query: 354 gcatgtctaacccttgcagaagcctagcttgtgttaatatgacttcataaaatcctacat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcatgtctaacccttgcagaagcctagcttgtgttaatatgacttcataaaatcctacat 613
Query: 414 attttctactattgagcagaaaccattgaacagacattgaatgaaactatgttaagtaca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attttctactattgagcagaaaccattgaacagacattgaatgaaactatgttaagtaca 673
Query: 474 atcaaatcgttcaggttctaatctcattaatcataagatactgggtagcagataagaatg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atcaaatcgttcaggttctaatctcattaatcataagatactgggtagcagataagaatg 733
Query: 534 actcttgccttggtttcactgtttggatagtgtcctggcaagaattaatagacctaaata 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 actcttgccttggtttcactgtttggatagtgtcctggcaagaattaatagacctaaata 793
Query: 594 ctgatagggtaatgagaatatgtggatttatgttagcttacctagaaatttataaat 650
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 794 ctgatagggtaatgagaatatatggatttatgttagcttgcctagaaatttataaat 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_j13.g1 MSMg01no104_j13.g1 CHROMAT_FILE:
MSMg01no104_j13.g1 PHD_FILE: MSMg01no104_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:55 2005
(488 letters)
>mm_chr15_44392611_44393497
Length = 887
Score = 890 bits (460), Expect = 0.0
Identities = 481/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 1 ttacatatcatgcagtcctgangtgaggggctagtgtagaatgggactatctactgatat 60
||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 687 ttacatatcatacagtcctga-gttaggggctagtgtagaatgggactatctactgatat 629
Query: 61 atttcagctagctattaaacattggagaatgaatgggatgaattgaggttggttgtgcaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 atttcagctagctattaaacattggagaatgaatggaatgaattgaggttggttgtgcaa 569
Query: 121 gagtgttggcagtttgacctacttttaggaatctaggccatagtaaatccagcatgtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gagtgttggcagtttgacctacttttaggaatctaggccatagtaaatccagcatgtaag 509
Query: 181 gtaacatatatcaggaggcttaccacaacattattttggaaataataaaaaaaatggaat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtaacatatattaggaggcttaccacaacattattttggaaataataaaaaaaatggaat 449
Query: 241 taatgcagatgcacataatgattaactgtatttcagttgtattaatagtggggagcagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taatgcagatgcacataatgattaactgtatttcagttgtattaatagtggggagcagta 389
Query: 301 ttctaaaccagggagagttttgcttgttgccactgattgatctggatcatatatccataa 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctaaaccagggagagttttgtttgttgccactgattgatctggatcatatatccataa 329
Query: 361 tacgtcacaaagaaccaaaggcttctaagagcaaatgacatatgcattttaactatgttt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 328 tacgtcacaaagaaccaaaggcttctaagagcaaatgacatatgtattttaactatgttt 269
Query: 421 taatacaatgaaaacacaatagatattagaaaagaaacagtatgtgtaaaacaaatagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taatacaatgaaaacacaatagatattagaaaagaaacagtatgtgtaaaacaaatagat 209
Query: 481 taaactga 488
||||||||
Sbjct: 208 taaactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
