BAC Information

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BAC

Clone NameMSMg01-105G15
Chromosome15 (Build37)
Map Location 68,866,297 - 68,866,522
singlet/doubletsinglet
Overlap geneKhdrbs3
Upstream geneZfat1, LOC100041000, EG665945, EG633752
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G15.T7 (MSMg01no105_g15.b1)MSMg01-105G15.TJ (MSMg01no105_g15.g1)
ACCAG319776AG319777
length714699
length of high quality
(start - end)
225 (69 - 293)167 (68 - 234)
definitionCHROMAT_FILE: MSMg01no105_g15.b1 PHD_FILE: MSMg01no105_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:02 2005CHROMAT_FILE: MSMg01no105_g15.g1 PHD_FILE: MSMg01no105_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCT
CTGTGCTGTCTAGAAGTTGGTAAAAATAATGAAGGTCTTGGGTATGTTTC
TGTTCTACAGCTACAACTTGCTTATTAAATAGAGGAGGAGACTGTTCTGA
AATTGCCTGTGTGGTGTGTATGGCCTTGGAAGGCTGTACTCTGTAAATTA
AAGGGACAGCAAAGACTCCTCCAGTTGACAGCTCAGAATGGCAGAAGCAA
GCATCCTTGTCCCTGCACCCCCCACCCCCTCCAAGTTCCCAGGAGGTAGT
GAGCAGGCATCTGCATGCTCCACAGGGATATGGTGAGTGGTGAGCAGGCT
GCTGTAAGTTTCACTTTCATAATTGTTTATGCAACTCCTGCAAATGAAGC
ACTCCTGGCTTGCCTTGCCTGCAAATGAAGGACAGGGCTCACCAAGTCTC
ATATCAGCACCCAGCCAATGCCACTATTGGCTCCTGAGGTCTAAGAGGCA
ATGGATCGACGTTATATTAGGTTCCCTACACCAAAGCTGTTGTTTTCCAT
ATCTTCACCCTTACAATGCTACTCCGCTTATAACAAATAACTATAGGACG
CTCAATAGTTCCAGAGTTCTTAGCCACTAGGCCTAGCTCCTTCCATTGTA
ATTCACGTTCCTATATTCCGCCGCATACGCCCTATCATTCTGTGTTGTAC
CTGCACTGGCCCTG
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGGTACATAAAGGGGATTTCTGAATAGGACC
CCAATAGCATGGGCATTACGACCAATGATTACTAAACAAACTCATGAAAC
TGAAAGACTTCTACATCAAAGAACACCATCCTTTGAGTGAAGATATATCC
TGCAGAATGGTAAAACAATCCTTACCAGCCAAGAGAGAAATAGCATCTAG
GATATACAATAAAAAACTAAACCCAAGGAAACAGTTCATTTAAATAGTGC
TCCACAAAACGAATCAGATCTCAACGATTACCAACAAAGCGTGAGAAAAC
CTTTTTTTAAAATATTTGACATTCTTGGGTAACAAAATAAAACCAGTCTT
TGAGATTTCATCTCGCCCAACTCTAAATAGCTAAGATTCAATAATAAAAA
TGAGACATCACATGTTGCCTTGAGTGCGCACAATTGGCCATCTTTATTCC
CTGTCAGTGCCAACGAAAATTGGTACTCACTCCATGGATACCAGAGTACA
CTTTTCTTCCAATATTAGCAATACATCTACCATATGATCTCTTCCTAACC
TGCCTGGGAACACACCCAAAGGCCTCTGTATTTTAACACCGACATTCCCG
CCCATCCATGCTCACAAAAGCCTATTACCAATTATCCCCTACCACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g15.b1 MSMg01no105_g15.b1 CHROMAT_FILE:
MSMg01no105_g15.b1 PHD_FILE: MSMg01no105_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:02 2005
         (225 letters)



>mm_chr15_68866097_68866722
          Length = 626

 Score =  422 bits (218), Expect = e-122
 Identities = 224/226 (99%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaaaaataatgaaggtcttgggtatgtttctgttctacagctacaacttgcttattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtaaaaataatgaaggtcttgggtatgtttctgttctacagctacaacttgcttattaa 260

                                                                       
Query: 61  atagaggaggagactgttctgaaattgcctgtgtggtgtgtatggccttggaaggctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaggaggagactgttctgaaattgcctgtgtggtgtgtatggccttggaaggctgta 320

                                                                       
Query: 121 ctctgtaaattaaagggacagcaaagactcctccagttgacagctcagaatggcagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtaaattaaagggacagcaaagactcctccagttgacagctcagaatggcagaagc 380

                                                         
Query: 181 aagcatccttgtccctgcacccccc-accccctccaagttcccagg 225
           |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aagcgtccttgtccctgcacccccccaccccctccaagttcccagg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space:   133272
Effective search space used:   133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)