BAC Information

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BAC

Clone NameMSMg01-105L02
Chromosome15 (Build37)
Map Location 17,606,582 - 17,606,930
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105L02.T7 (MSMg01no105_l02.b1)MSMg01-105L02.TJ (MSMg01no105_l02.g1)
ACCAG319980AG319981
length705714
length of high quality
(start - end)
440 (47 - 486)352 (90 - 441)
definitionCHROMAT_FILE: MSMg01no105_l02.b1 PHD_FILE: MSMg01no105_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:24 2005CHROMAT_FILE: MSMg01no105_l02.g1 PHD_FILE: MSMg01no105_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGC
GGAATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACTTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTTCTC
AGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTA
TGTTCATATCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGTATGGATTTGGAGGTTATCATCCCGACTGAGGTAATACTTTCTCCC
CGAAACTCTCACAATATGTATTCCCTGATAATTGCACACTATTTCTCAAC
CTACGCACACCCCGACATTTCATATAACTTGTTAAACATATGATACTCCT
GGAGT
NCAAATTTCTTCTCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCTTTTT
GGCTTGGAAAAGCCATTATGAAAGTAGTTCTGGAATTTTCTCATTGGGTT
TGCAAGAACAACGTAGAAGTAGCTGACAGGACACAGGTAAAACAGTATTC
TAATAAAGGGATCTAAGGAGCCCTCTTGGATTTGGAAGAGTCAAGAGACA
GATAGACTAGCTAGATAAAAAGACACAGATAAGAAGAGGTTTACATAGAG
CGAGCAAGTTAGTAGTAGGATGAGGTCTCTAAGTAAATATGTTTTACATA
GTTAAGAAAATAAAGTTACCTCACTGAGATAGAAGTTTTTTTTTTCTTTT
TTTACCTCAGTTTATGCCTATCACCTTTTTATTGGTATAAGTATTAGGTA
TTTTAACTGGTTATTCTTATAAGGTTATATTTATATATTCAGCACAACAT
ATGTATGGTTCATTTTTTTCATGAATTTGAATGATAGCAAGAAACCTTAT
AAGACGCACTTGCATTAACGAAGCACCGCTTTAATCCCAATCCTCAACTA
ACTTACAGAAAACTTTGTTCATAACCTTGTCAATCACACGGCTTTTCCTT
CAGCACACTTAAATAAACTCTTAATACCTATCCATAAACCTTCGCTATCC
ACCACCCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_l02.g1 MSMg01no105_l02.g1 CHROMAT_FILE:
MSMg01no105_l02.g1 PHD_FILE: MSMg01no105_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:24 2005
         (352 letters)



>mm_chr15_17606382_17607130
          Length = 749

 Score =  571 bits (295), Expect = e-167
 Identities = 337/353 (95%), Gaps = 5/353 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccctttttggcttggaaaagccattatgaaagtagttctggaattttctcattgggt 60
           ||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 549 ctcccctatttgtcttggaaaagccattatgaaagtagttctagaattctctcattgggt 490

                                                                       
Query: 61  ttgcaagaacaacgtagaagtagctgacaggacacaggtaaaacagtattctaataaagg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489 ttgcaagaacaacatagaagtagctgacaggacacaggtaaaacagtattctagtaaagg 430

                                                                       
Query: 121 gatctaaggagccctcttggatttggaagagtcaagagacagatagactagctagataaa 180
           |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 429 gatctaagtagccctcttggatttggaaaagtcaagatacagatagactagctagataaa 370

                                                                       
Query: 181 aagacacagataagaagaggtttacatagagcgagcaagttagtagtaggatgaggtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagacacagataagaagaggtttacatagagcgagcaagttagtagtaggatgaggtctc 310

                                                                       
Query: 241 taagtaaatatgtttt-acatagttaagaaaataaagttacctcactgagatagaagttt 299
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taagtaaatatttttttacatagttaagaaaataaagttacctcactgagatagaagttt 250

                                                                
Query: 300 tttttttctttttttacctcagtttatgcctatcacctttttattggtataag 352
           |||    ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 ttt----ctttttttacctcagtttatgtctatcacctttttattggtataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 749
Length adjustment: 9
Effective length of query: 343
Effective length of database: 740
Effective search space:   253820
Effective search space used:   253820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)