BAC Information

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BAC

Clone NameMSMg01-105M19
Chromosome15 (Build37)
Map Location 102,327,343 - 102,454,141
singlet/doubletdoublet
Overlap genePcbp2, Map3k12, Tarbp2, Npff, Atf7
Upstream geneKrt85, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105M19.T7 (MSMg01no105_m19.b1)MSMg01-105M19.TJ (MSMg01no105_m19.g1)
ACCAG320058AG320059
length703703
length of high quality
(start - end)
423 (65 - 487)302 (68 - 369)
definitionCHROMAT_FILE: MSMg01no105_m19.b1 PHD_FILE: MSMg01no105_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:33 2005CHROMAT_FILE: MSMg01no105_m19.g1 PHD_FILE: MSMg01no105_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,453,788 - 102,454,141)(102,327,343 - 102,327,644)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCTC
AGGGTCTTCCACATGGTAGGTAAGCACTCTGCCATGTGAGCTACAGTCTT
TAGCCCTTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGGTTTATGCAGTGT
GTCATGTAGCCCATACTAGCTTTGAACTCATTTTTAAATTTCTGATCCTT
CTATCTCCACGTACCAAGTGTTGATACAAGCATTCGCTTCCATGCCCAGT
TTATCAGTTTATGTGGTGCTGGGGATTGAACCTAGGGCTTTGTGCATGCA
CTGTACCCATTGAGCTTTATCCCCAGTCCTCTTTTTATATCTTGAGTGAT
GTGAGTGAAATAGACTCATAGTTCAGGAAATTGAACATTTTCTCATGTTT
TCTTTGCATCCAGATTTACAAAAAAGAGCTATCATAGTATTTTAGGACAA
GGGTTGAGGAACTCAAACACAATTTGTTTTTAAGCATGGGGGATGTAAAG
TAAGTGGAAGCTGTTGCGAAACTCAACATGACTGTAAGACAAGAAGCTAA
AGATAAAGTTGGCAGCTATACGACAGTATCTTACCAGCTTGTTCCCAATT
CTGTACAGAAAAGGGACAGGACTTTGCCCTTTGCTTACAACTTGTATCAT
CTTTATTATTGAGCTAAGACTTCATCCAGTTATTAATAACTTCCTTTGCC
TAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCTCTCTCTGCCTCTTGATTTGTGGTTGATGT
GCTGTTACTACAGATGCTATGCACTATCTACTGTATCTGTTTTAACACTA
CACTGGGTTTGTTAAAGTCAGGTGTCTATGTGCTCAGATGACAAAACCTG
TATCTGAGCCATTTCCACAGCCTATGTAGACCTGATATATGTGCATGTGA
ACATGTATGGGTTTGTGGAATTCAAAAACTGATTTTGTTATTTTCCTCAG
CCATCTTTAATTTTTTGAGATTTTTTTTTTAAAGATTTATTTATTATTAT
ATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGAGTCAGA
TCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT
CTGGACCTTCGGAATAGCAGTCGTTTGCTCTTACCCACTGAGCCATCTCA
CCAGTCCCTTTTTTGAGATTTTTTACTGAGCTTGGAGCTCACTGATTTGG
CTAGATTATGTGCCCTCCTCTCCACTTCCCCTGCATTGATATTCCAGCGG
CACATTGCCACTTCTGGCATTAACCTACAGATTCCCCCTCTATTGCTGCA
TTTTTACCTATGAAAGGTTTCACTCTGCATAGCTTGATATCTTCACCTGA
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_m19.b1 MSMg01no105_m19.b1 CHROMAT_FILE:
MSMg01no105_m19.b1 PHD_FILE: MSMg01no105_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:33 2005
         (423 letters)



>mm_chr15_102453322_102454144
          Length = 823

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 70  tgtggtttatgcagtgtgtcatgtagcccatactagctttgaactcatttttaaatttct 129
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tgtggtttatgtagtgtgtcatgtagcccatactagctttgaactcatttttaaatttct 761

                                                                       
Query: 130 gatccttctatctccacgtaccaagtgttgatacaagcattcgcttccatgcccagttta 189
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 760 gatccttctatctccacgtaccaagggttgatacaagcattcgcttccatgcccagttta 701

                                                                       
Query: 190 tcagtttatgtggtgctggggattgaacctagggctttgtgcatgcactgtacccattga 249
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tcagtttatgtggcgctggggattgaacctagggctttgtgcatgcactgtacccattga 641

                                                                       
Query: 250 gctttatccccagtcctctttttatatcttgagtgatgtgagtgaaatagactcatagtt 309
           |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 640 gctttatccccagtccactttttatattttgagtggtgtgagtgaaatagactcatagtt 581

                                                                       
Query: 310 caggaaattgaacattttctcatgttttctttgcatccagatttacaaaaaagagctatc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caggaaattgaacattttctcatgttttctttgcatccagatttacaaaaaagagctatc 521

                                                                 
Query: 370 atagtattttaggacaagggttgaggaactcaaacacaatttgtttttaagcat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atagtattttaggacaagggttgaggaactcaaacacaatttgtttttaagcat 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no105_m19.g1 MSMg01no105_m19.g1 CHROMAT_FILE:
MSMg01no105_m19.g1 PHD_FILE: MSMg01no105_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:33 2005
         (302 letters)



>mm_chr15_102327143_102327844
          Length = 702

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctctctgcctcttgatttgtggttgatgtgctgttactacagatgctatgcactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctctctgcctcttgatttgtggttgatgtgctgttactacagatgctatgcactat 260

                                                                       
Query: 61  ctactgtatctgttttaacactacactgggtttgttaaagtcaggtgtctatgtgctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactgtatctgttttaacactacactgggtttgttaaagtcaggtgtctatgtgctcag 320

                                                                       
Query: 121 atgacaaaacctgtatctgagccatttccacagcctatgtagacctgatatatgtgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaaaacctgtatctgagccatttccacagcctatgtagacctgatatatgtgcatg 380

                                                                       
Query: 181 tgaacatgtatgggtttgtggaattcaaaaactgattttgttattttcctcagccatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tgaacatgtatgggtttgtggaattcaaaaactgattttgttattttcctcagtcatctt 440

                                                                       
Query: 241 taattttttgagattttttttttaaagatttatttattattatatgtaagtacactgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattttttgagattttttttttaaagatttatttattattatatgtaagtacactgtag 500

             
Query: 301 ct 302
           ||
Sbjct: 501 ct 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)