BAC Information

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BAC

Clone NameMSMg01-106L15
Chromosome15 (Build37)
Map Location 6,572,767 - 6,573,373
singlet/doubletsinglet
Overlap geneFyb
Upstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, LOC100039453
Downstream geneEG665511, 4921505C17Rik, Osmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106L15.T7 (MSMg01no106_l15.b1)MSMg01-106L15.TJ (MSMg01no106_l15.g1)
ACCAG320730AG320731
length1,2751,297
length of high quality
(start - end)
699 (88 - 786)609 (91 - 699)
definitionCHROMAT_FILE: MSMg01no106_l15.b1 PHD_FILE: MSMg01no106_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:35 2005CHROMAT_FILE: MSMg01no106_l15.g1 PHD_FILE: MSMg01no106_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTTTTTNNNCACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTACTGCCCCTGGTATCCCTTTATCTCTTTGAGTAAAA
GTTAGGTCACTGCCCTTCACCGGAATTTACCATCACTAAGGAAGAAAGAA
GTTTCTGACCATAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAG
TTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCCAGCTG
TGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGAACT
CCCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGA
AAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCT
GACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTATTTGCGTTT
TCATTTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATT
TGTACCTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATAAAA
AGTCTGTTGTTCGATTTGAAAAATTACACTCAGATTCCACATGAACTCTC
CTGTGTGTGTGTCTGTTTGTCGCTCATCCACGTTTTGCCCACCCGTGTCG
AGAGACCCCGTTCCACGCAGACACAGGGACCCAGAAGGTCTGCGGCAGTC
AGGATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTGGTTTGAAGTTC
TCTATCTTTGTTGGATCTTTCTGTGGTTAAGGTATCAGAGTAATAGTGGC
TTCTTAAAATGAGTTGGGTAGAGTACCTTCTCCTTCTATTTGGTGGAATT
AGTGGTGCAAACCGGGGATTAGATCTCCTTTGAAGGTCTGAATAAACGCT
GGCCTTAAACCATCTGGGCCTGGGGTTTTTTTTGGTGGGGAGACCTTAAA
GACCGGCTTTTATTTCCTTTAACGAAAGGGGCCATTTTAATCCTTTTATT
TTGATCCTGGTTTTACTTTTGGGACCTGGTTATCTGGCTATAAAAATTGG
TCCCTTTTTGTCCAGATTTTTCCCCTTTTTTTGGGAATATCACCTTTTGT
TAAAAAAGATTCAGAGGGTGTGTTTTAAATATCTTTCGGCGTGGGGGTGT
TGTTCGTCCCTCCTTCCTTTTCGAGAATTTGGTACATAAATAATATTCGC
CTGGCGTCCCATTCCTCAGTATGTG
NCCCGGTTTTTTTTTTAGAGCATGGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGACACATGCCAATTA
AAAAGCCATGATTCCAGCACTCCCCTAGGCAGAGGCAGGCAGATTTCTGA
GTTTGAGGCCAGCCTGGTCTACAGAGGGAGTTCCAGGACAGCCAGGGCTA
TACAGAGAAACCCTGTCTCAAAAAACAAAGAAACAAAAAAGACTCCAAGC
ATGTTGCCTTTTTTAGTGATTCCTGCAACGCTGGCACGTTGACTAGCATC
CCATGCTCTACCACTGCTCTTGAAATCTGTTCTTCCTTCCACAGCCTTAT
CCAGGACAGATCCTAGCAATGAGGTTTTCAGAGAGTCAGCACAGCAGGCC
CCATGCTGGGTTTTAGAACAATATGCTATCAAGTCTGGCCTATGACTGAC
AGAGGAACACATTTTCTTTATAATTATACACTGCTGTAAAAGTTGCCTAG
TTGATAAAAGTACTTTTGCTGTGTGAGGCCTTATCAACAATGCTTGCTTT
CTGTCTAGGTTTTTAGGTCTTCTGACAGGTGTCAGGCCTAAGGAAACCAT
GAGACAGTCCCCCTAGTCCCTCGTGCAAACCTTAGTTTCTACCAACCTCA
GACCGGTTCCTGATGGAAGCTGCTGGAGACACCCACTGCTTTTTCATAAC
CGTGGTTTCTGTACGCCCTTCTCATGCTTGTGGAATTGCCTGGACACCCG
TGCTTAAATAGCGCCACCTGCTGGCTGTCCTTTCTCCTTAACCTTATTGA
ATGCCACCCTCTTCTGTTAACTGATCCCTGAGACCTGCTGATCCTTTTAC
TGAGTCTTTACTCTTTTGGGTGGTCCTGCAGGGCCCCTGAAGCCAAAAGA
ACTATTGGTCAAATATATTTTGTTTTTCATAATCCTCATGGAAAGGATAC
CGGCCCCCCAGGTGTTATTCACTTTCCAACTGCTTGATCCCTTTTGGGAC
GATTTTTTTCCAAAAATCTGTCCTTACTCCAAAGGTTTTGCTGGAACTTG
GTGTCTTGGGGAAGGCCTTTTTTTCAAATTTTTATAATGTTTGGTATTTT
GTGCCCTCTTTGGTTGGTTATAATTTCTGTTTTCTTATTTGTATACCTTT
ATCCTAAAAATAATTTTTTCCTGGTGTAAAATTCTATCGTGGGTTTAATT
TTATTCTTTGTCCTACTTTGTGTTATTTAATGTGCTGTATCTAAATAACT
TATGTGTTTCTTCTTATCCTCTTTGTCTTGCTGATTCTCTTATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_l15.g1 MSMg01no106_l15.g1 CHROMAT_FILE:
MSMg01no106_l15.g1 PHD_FILE: MSMg01no106_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:35 2005
         (609 letters)



>mm_chr15_6572428_6573435
          Length = 1008

 Score = 1071 bits (554), Expect = 0.0
 Identities = 595/612 (97%), Gaps = 8/612 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgccaattaaaaagccatgattccagcactcccct---aggcagaggcaggcagatttc 57
           |||||||||||||||||||||| ||||||||    |   |||||||||||||||||||||
Sbjct: 946 atgccaattaaaaagccatgatcccagcact----taggaggcagaggcaggcagatttc 891

                                                                       
Query: 58  tgagtttgaggccagcctggtctacagagggagttccaggacagccagggctatacagag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 890 tgagtttgaggccagcctggtctacagagggagttccaggacagccagggctatatagag 831

                                                                       
Query: 118 aaaccctgtctcaaaaaacaaagaaacaaaaaagactccaagcatgttgccttttttagt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aaaccctgtctcaaaaaacaaagaaacaaaaaagactccaagcatgttgccttttttagt 771

                                                                       
Query: 178 gattcctgcaacgctggcacgttgactagcatcccatgctctaccactgctcttgaaatc 237
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 770 gattcctgcaaagctggcacgttgactagcatcccatgctctaccacagcttttgaaatc 711

                                                                       
Query: 238 tgttcttccttccacagccttatccaggacagatcctagcaatgaggttttcagagagtc 297
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 710 tgttcttccttctacagccttatccaggacagattctagcaatgaggttttcagagagtc 651

                                                                       
Query: 298 agcacagcaggccccatgctgggttttagaacaatatgctatcaagtctggcctatgact 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agcacagcaggccccatgctgggttttagaacaatatgctatcaagtctggcctatgact 591

                                                                       
Query: 358 gacagaggaacacattttctttataattatacactgctgtaaaagttgcctagttgataa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gacagaggaacacattttctttataattatacactgctgtaaaagttgcctagttgataa 531

                                                                       
Query: 418 aagtacttttgctgtgtgaggccttatcaacaatgcttgctttctgtctaggtttttagg 477
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 530 aagtatttttgctgtgtgaggccttatcaacaatgcttgctttttgtctaggtttttagg 471

                                                                       
Query: 478 tcttctgacaggtgtcaggcctaaggaaaccatgagacagtccccctagtccctcgtgca 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 470 tcttctgacaggtgtcaggcctaaggaaaccatgagacagtccccctagtccct-gtgca 412

                                                                       
Query: 538 aaccttagtttctaccaacctcagaccggttcctgatggaagctgctggagacacccact 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaccttagtttctaccaacctcagaccggttcctgatggaagctgctggagacacccact 352

                       
Query: 598 gctttttcataa 609
           ||||||||||||
Sbjct: 351 gctttttcataa 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space:   597802
Effective search space used:   597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)