Query= MSMg01no107_l01.b1 MSMg01no107_l01.b1 CHROMAT_FILE:
MSMg01no107_l01.b1 PHD_FILE: MSMg01no107_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:55 2005
(501 letters)
>mm_chr15_18949083_18949983
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Minus
Query: 1 ttctcattgttatctatgtggtcatctctgtgtcccaattttgttttgaatttataaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttctcattgttatctatgtggtcatctctgtgtcccaattttgttttgaatttataaaat 642
Query: 61 caagagactctctaaagtaaatgactagcctataaatctttgaaggtgttccttaaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caagagactctctaaagtaaatgactagcctataaatctttgaaggtgttccttaaatgt 582
Query: 121 caatatctgagtggattgtggtgatgttagtaagtgaaatttgtacagagtagtatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caatatctgagtggattgtggtgatgttagtaagtgaaatttgtacagagtagtatataa 522
Query: 181 aatagaatgtataaagtattatggtctgaagaaaataactactaattcattgtggaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 521 aatagaatgtataaagtattatggtctgaagaaaataactactaattaattgtggaggtt 462
Query: 241 acttcaaagctaaaccctgtcctatggaaagggggcttttgctgaattctttagatcttg 300
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 461 acttcaaagctaaaccctgtcctatggaaagggggcttttgctgaagtctgtagatcttg 402
Query: 301 gcttcatttcaccctcccatttcttcctgatcttacctcacactttccctaagcatctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 401 gcttcatttcaccctcccatttcttcctgatcttacctcacactttccctaagcaactgt 342
Query: 361 ccgactattcagccttttcaagacttttgagtaagttcccaaatcagtgacacaggctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccgactattcagccttttcaagacttttgagtaagttcccaaatcagtgacacaggctcc 282
Query: 421 aagccaccaaagctgtcagtgaaatggtaaccatttagcagttattttagtggcattccc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 281 aagccaccaaagctgtcagtgaaatggtaaccatttagcagttattttagtggcgttccc 222
Query: 481 actgatgtgatcattgcacag 501
|||||||||||||||||||||
Sbjct: 221 actgatgtgatcattgcacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_l01.g1 MSMg01no107_l01.g1 CHROMAT_FILE:
MSMg01no107_l01.g1 PHD_FILE: MSMg01no107_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:55 2005
(614 letters)
>mm_chr15_18819060_18820073
Length = 1014
Score = 1035 bits (535), Expect = 0.0
Identities = 597/625 (95%), Gaps = 14/625 (2%)
Strand = Plus / Plus
Query: 2 ccaattgttagggtttaagtaaattctaaaactatgctggaaaacataaattgtggttga 61
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 190 ccaattgttagggtttaagtaaattataaaactatgctggaaaacataaattgtggttga 249
Query: 62 aacctgttcaaaattggcaatcacattaaaacagaccagaacct------------atgc 109
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 250 aacctgttcaaaattggcaatcacattaaaacagaccagaacctgaatttacacctatgc 309
Query: 110 cttcattacaaaaaaaaaa-gcatattttttgtttgctaatgcatgcatttaataccttg 168
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 310 cttcattacaaaaaaaaaaagcatattttt-gtttgctaatgcatgcatttaataccttg 368
Query: 169 atacattctttctcctaccctatgtatattcaagacctggacttccaaggcatacagtgc 228
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 atccattctttctcctaccctatgtatattcaagacctggacttccaaggcacacagtgc 428
Query: 229 aatcctactatactttgttgccaccaattagttctaactcttgaactacttgcttaacat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 aatcctactatactttgttgccaccaattagttctaactcttgaactacttgcagaacat 488
Query: 289 acccctggacatgctgcacaggaatactgtcacacagccatttattttgcatcaccttga 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 489 acccctggacatgctgcacaggaatactgtcacacagccatttattttgcatcagcttga 548
Query: 349 ctgcaatttccaccaaaatgactctttagaacattcaggttgaaattaggcactctttta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgcaatttccaccaaaatgactctttagaacattcaggttgaaattaggcactctttta 608
Query: 409 gcatgcgcacccttccctcctagatgatgcaaaccatttgacagtgtctgtgtagcaagc 468
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 609 acatgcgcacccttccctcctagatgatgcgaaccatttgacagtgtctgtgtagcaagc 668
Query: 469 tgaatggagcagacgcatggctctatgagcaccactcagagtaatttactctcagtgaac 528
|||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 669 tgaatgaagcagacacatgactctatgggcaccactcagagtaatttactctcagtgaac 728
Query: 529 catccttagaaccgaaactctaaacacatttcactcagaaaccttaagagtttgttcagt 588
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 729 catccttagaaccgaaactctaaacacatttcactcagaaaccttaagattttgctcagt 788
Query: 589 gatggcttcattgagttgataacca 613
|||||||||||||||||||||||||
Sbjct: 789 gatggcttcattgagttgataacca 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
