BAC Information

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BAC

Clone NameMSMg01-108F05
Chromosome15 (Build37)
Map Location 49,173,762 - 49,174,060
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F05.T7 (MSMg01no108_f05.b1)MSMg01-108F05.TJ (MSMg01no108_f05.g1)
ACCAG321801AG321802
length728733
length of high quality
(start - end)
---299 (80 - 378)
definitionCHROMAT_FILE: MSMg01no108_f05.b1 PHD_FILE: MSMg01no108_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:09 2005CHROMAT_FILE: MSMg01no108_f05.g1 PHD_FILE: MSMg01no108_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTCTAAATTTGCGGCGCTAAAGAATCCTTTTTCGCACCGCCGGCG
GAANNCACCNATTTCTGCACCCGAAGGAAANNGGACCAAGNAGAAAGGCA
CGAACGACAAAAATTTCTCCCGAAGAACAGAGAGNGNGCNNCNGNAGCAN
NCACCAGGGNAAAGAACACCGCNCGGCCAGCAAACGGAGNANAAAAACAG
GGAGGCACGAAGCCACACTGCGCCGCCGACGAACAAGCAGAGAGCATTTT
ATGCATGAAATAGAAGTCTAGCTTGCTGAATTTCTTTCTGATCACATTCA
CCAAAGACAAAGATTTTTTTTTTTCCACGAAGCCNGAAGGGCCCCGGGAA
CCGGACAATCCCCACCCCACGGAGCAGCCGAAACCCGCCCCAAGAAGCAA
ACGCACACCCACCACGGAGCACAAGGCACACACGCCCCCGAACCACAGAT
AACTCCACACAGACCCACANGANGAGGAACAAAACCCCCCCTGCCAGAAA
CACCGCCCCCACCGGCCACACAACAACACGCCCGGCACCGACCCGAAACC
CCGCAACACACAGCCAACGCCACCCACCACCCAACCCCCTACCGCCCGTG
CACATATATTTTTATGTTTTCTTTGTGCCTATTTCCTTGATTCAAATCAA
CCTTATTTTGTTATTTTTTCTCATTCACACCTTCGTAAACATAATTAATA
CCACATGTTCTCTTACTTGCATAATCGC
TTTATCGAATATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAATGGGCTTTAAATCAGG
CCTGACTCTCACTTGGTTGCCTCCGTATTTTGGTAATAGGAGACCCCAGC
ATGCTGGACTTCTGCAGAATAAAACACTATTTGTATTTTCATACTATTTG
AGTCTGGCATATCATTCTTCAGCAAATCATGGACCCTTACAATTGAAGGT
TCCTTACAGTGGAGGAACTGTGTGATAATACATGTCTTATATTTTAAGTA
ATCCAGGTTATTGTAATTTGCTCAGGAAGCCGCATGGAATACATATTCAA
TTATAAATATTGCTTTCTGGTATTTTGGGAAAAATACTCACCCTAATTTA
AAAAAATACTGATGCAATGATTGATTAATACATTTTGAGAAAATTATTCC
CAATTGTTCAACTTCTAAATAGATGGTCAAAAGGAGAAGGTGGTATACTT
TTATTTGAACGCATATAGAATATAGAATATGCCTTCAAGGAAGGTAATGA
CCCAGTGTGATATTTGATACTTTGAGAATATGTCCGTCTCTCCAAATAAG
TATGTCTTGCTTCCATAGTAATCACAAGGTATAAAGGACTACGAGATAAA
ACCAGTTCCTCAACCTTTCCTCTGATCCAAAAGCCTATTATGAAATAATG
ACCTGACAACTGACCCTTTATTTGATCTAACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f05.g1 MSMg01no108_f05.g1 CHROMAT_FILE:
MSMg01no108_f05.g1 PHD_FILE: MSMg01no108_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:09 2005
         (299 letters)



>mm_chr15_49173562_49174260
          Length = 699

 Score =  524 bits (271), Expect = e-153
 Identities = 292/299 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaatgggctttaaatcaggcctgactctcacttggttgcctccgtattttggtaatag 60
           ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct: 201 cctaatgggctttaaatcaggcctgacactcacttggttgtctctgtattttggtaatag 260

                                                                       
Query: 61  gagaccccagcatgctggacttctgcagaataaaacactatttgtattttcatactattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaccccagcatgctggacttctgcagaataaaacactatttgtattttcatactattt 320

                                                                       
Query: 121 gagtctggcatatcattcttcagcaaatcatggacccttacaattgaaggttccttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtctggcatatcattcttcagcaaatcatggacccttacaattgaaggttccttacag 380

                                                                       
Query: 181 tggaggaactgtgtgataatacatgtcttatattttaagtaatccaggttattgtaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggaactgtgtgataatacatgtcttatattttaagtaatccaggttattgtaattt 440

                                                                      
Query: 241 gctcaggaagccgcatggaatacatattcaattataaatattgctttctggtattttgg 299
           ||||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 441 gctcaggaagcagcatggaataaatattcaaatataaatattggtttctggtattttgg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)