BAC Information

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BAC

Clone NameMSMg01-108K05
Chromosome15 (Build37)
Map Location 20,568,462 - 20,746,599
singlet/doubletdoublet
Overlap geneAcot10, LOC100040302
Upstream geneLOC621884, LOC100040265
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108K05.T7 (MSMg01no108_k05.b1)MSMg01-108K05.TJ (MSMg01no108_k05.g1)
ACCAG322033AG322034
length696687
length of high quality
(start - end)		549 (49 - 597)611 (77 - 687)
definitionCHROMAT_FILE: MSMg01no108_k05.b1 PHD_FILE: MSMg01no108_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:34 2005CHROMAT_FILE: MSMg01no108_k05.g1 PHD_FILE: MSMg01no108_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,746,230 - 20,746,599)(20,568,462 - 20,569,071)
sequence
NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATAAAAATACCCACAAAACAAGATCATCTAACTTACACACA
AAAGACCAATAATGTAAAATTAAAAAGTACCCTAACACAACATTAGAAAA
CAAAGAGTTTCCAAAGATGACATTGACATTGTTTTGTATTGGGCATCTTC
TCTTAGGTATCAGGTCTATGGTATAGCTGTCCCCTAAGAGGTTATGCTAG
AGTCTGACCAATACAGATGTGGATGCACACAGCCAACTATCACACTGAGC
ATGGGGACCCCAATGGAGGAGTTAGGAGAAGAACTGGGGAGCTGGGGGGA
TTTGCAACCCCATAGGAAGAACAACAACATCAAACAACCAGATCCCCAAA
GCTCCCAGGGACTAAAACACCAACCAAAGTTTACACATAGAAGGATCCAT
GGCTTCAGCTGCATATGTATCAGAGGATGGCCCTGTCTGGCATCAATGGG
AGGGGAGCTTCTTGATCCTGTAAAGTCTCAATGACCCAGCATAAGAGAAT
GCTAGAGTGCTGAGGAGAGAGAGTGGGTGAGTGGATGGGGAAGCATCCTC
AGAGAAGCACAGAGGTGGGATAGGGGCCTTGTGCAGGAAGAAAAAGTGTA
GTTCCATTCATTAGAGACAATGTCTAGGTTTGGGATAGGGGCATGT

NTTTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTTACTCTTGTAATATCCTTG
CTTCCTATGAGTTGGAGCAGACGAAATCTCTGGGGCTTAGGCAGCATGTA
CAAGGTAGGGTGTCTCTGCATGCTTGTAGGACATTCTAAATTAAACCCCT
TTCCCTCTTGAGATCTGATCTGTACAAGTTGTCTTCTGAGATATTCATAC
AATTTCATCCTCAGCAAGGAAGGTGATACAAAGTAAAGAAGGAAGAGAAA
AATCCTGATTTATTTCAGACAGTTAGTTCAATTTGCTTTTACTTGTTTGG
GAAATTGCTTTTTCAATGCAGACAAAAATGTATTTCACTAAAGCAATTCT
GTGGGTTTGATGACACTGCAGTGTGTTTCTTCCTGGTATCTGCTGTAAGT
GTAAATGAAATGCGAGGACAGAGGGATTATCGTTATTTACTTGCCTTTAT
TGCTGCTCTTTCTTACCTACTCCATTACATGTGTGTTAACTGGAGTTACC
ATTTACACTTATTTAACAGTATTGACTGAAATAACTCTGAATCTTTTCCA
GTGAGGACTGATTTAGCTACAAATCACTGTTCTGAGTCTGAAATCATTAA
TCAGCCTTAGGCAAGATCCATTATGTGGGATTTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_k05.b1 MSMg01no108_k05.b1 CHROMAT_FILE:
MSMg01no108_k05.b1 PHD_FILE: MSMg01no108_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:34 2005
         (549 letters)



>mm_chr15_20746230_20747178
          Length = 949

 Score =  677 bits (350), Expect = 0.0
 Identities = 365/370 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataaaaatacccacaaaacaagatcatctaacttacacacaaaagaccaataa 64
           |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 370 gaattccataaaaatagccacaaaacaagatcatctaccttacgcacaaaagaccaataa 311

                                                                       
Query: 65  tgtaaaattaaaaagtaccctaacacaacattagaaaacaaagagtttccaaagatgaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtaaaattaaaaagtaccctaacacaacattagaaaacaaagagtttccaaagatgaca 251

                                                                       
Query: 125 ttgacattgttttgtattgggcatcttctcttaggtatcaggtctatggtatagctgtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgacattgttttgtattgggcatcttctcttaggtatcaggtctatggtatagctgtcc 191

                                                                       
Query: 185 cctaagaggttatgctagagtctgaccaatacagatgtggatgcacacagccaactatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cctaagaggttatgctagagtctgaccaatacagatgtggatgcacacagccaactatca 131

                                                                       
Query: 245 cactgagcatggggaccccaatggaggagttaggagaagaactggggagctggggggatt 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 130 cactgagcatggggaccccaatggaggagttaggagaagaactgaggagctggggggatt 71

                                                                       
Query: 305 tgcaaccccataggaagaacaacaacatcaaacaaccagatccccaaagctcccagggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tgcaaccccataggaagaacaacaacatcaaacaaccagatccccaaagctcccagggac 11

                     
Query: 365 taaaacacca 374
           |||| |||||
Sbjct: 10  taaaccacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_k05.g1 MSMg01no108_k05.g1 CHROMAT_FILE:
MSMg01no108_k05.g1 PHD_FILE: MSMg01no108_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:34 2005
         (611 letters)



>mm_chr15_20568262_20569272
          Length = 1011

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggttactcttgtaatatccttgcttcctatgagttggagcagacgaaatctctggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggttactcttgtaatatccttgcttcctatgagttggagcagacgaaatctctggggc 260

                                                                       
Query: 61  ttaggcagcatgtacaaggtagggtgtctctgcatgcttgtaggacattctaaattaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggcagcatgtacaaggtagggtgtctctgcatgcttgtaggacattctaaattaaac 320

                                                                       
Query: 121 ccctttccctcttgagatctgatctgtacaagttgtcttctgagatattcatacaatttc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttccctcttgagatctgatctgtacaagttgtcttctgagatattcatacaatttc 380

                                                                       
Query: 181 atcctcagcaaggaaggtgatacaaagtaaagaaggaagagaaaaatcctgatttatttc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctcagcaaggaaggtgatataaagtaaagaaggaagagaaaaatcctgatttatttc 440

                                                                       
Query: 241 agacagttagttcaatttgcttttacttgtttgggaaattgctttttcaatgcagacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacagttagttcaatttgcttttacttgtttgggaaattgctttttcaatgcagacaaa 500

                                                                       
Query: 301 aatgtatttcactaaagcaattctgtgggtttgatgacactgcagtgtgtttcttcctgg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 aatgtatttcactaaagcaattctgtgggtttgatgacactgcagtatgtttcttcctgg 560

                                                                       
Query: 361 tatctgctgtaagtgtaaatgaaatgcgaggacagagggattatcgttatttacttgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctgctgtaagtgtaaatgaaatgcgaggacagagggattatcgttatttacttgcct 620

                                                                       
Query: 421 ttattgctgctctttcttacctactccattacatgtgtgttaactggagttaccatttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttattgctgctctttcttacctactccattacatgtgtgttaactggagttaccatttac 680

                                                                       
Query: 481 acttatttaacagtattgactgaaataactctgaatcttttccagtgaggactgatttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttatttaacagtattgactgaaataactctgaatcttttccagtgaggactgatttag 740

                                                                       
Query: 541 ctacaaatcactgttctgagtctgaaatcattaatcagccttaggcaagatccattatgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctacaaatcactgttctgagtctgaaatcattaatcagccttaggcaagatccattatgt 800

                     
Query: 601 gggatttgag 610
           ||||||||||
Sbjct: 801 gggatttgag 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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