Query= MSMg01no110_b17.b1 MSMg01no110_b17.b1 CHROMAT_FILE:
MSMg01no110_b17.b1 PHD_FILE: MSMg01no110_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(645 letters)
>mm_chr15_44408789_44409833
Length = 1045
Score = 1013 bits (524), Expect = 0.0
Identities = 612/646 (94%), Gaps = 14/646 (2%)
Strand = Plus / Minus
Query: 4 ggaattccataactttccatgggtaagtaagcatagaacacatgtggctcaatcattcct 63
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 945 ggaattccataactttcaatgggtaagtaagcatagaacacatgtggttcaatcattccc 886
Query: 64 atcaccatagatagtgtccaacaatagtaaagaggcatc--------aagaaggaagtaa 115
|||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 885 atcaccatagctagtgtccaacaatagtaaagaggcatcaaattctaaagaaggaagtaa 826
Query: 116 ggccatttttacctaaccagcatgcatacattcctataaactggtagacaatgaaaaagc 175
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 825 ggccatttttacctacccagcatgcatacattcctataaactggtagacaatgaaaaaac 766
Query: 176 cgaggggacaagagctaaagaatgactcatttttaacaaagtcccgattgcaaatccact 235
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 765 ccagggaacaagagctaaagaatgactca-ttttaacaaagtcccgattgcaaatccact 707
Query: 236 gattgtgaactaataaattgttcaaaactgcaa-gtctttaggataatttgtaatgtagc 294
||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 706 gattgtgaactgataaattgttcaaaactgtaaggt-tttaggataatttgtaatgtagc 648
Query: 295 aagaactaactggtgcattgttttcattttggcctctttgtttacattatatacactgtg 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 647 aagaactaactggtgcattgttttcattttggcctctttgtttacattatatactctgtg 588
Query: 355 ggttacaataaaagacatttttaaaaatcatactt-aaaatctaataatgcaaaggctat 413
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 587 ggttac-ataaaagacatttttaaaaatcacacttaaaaatctaataatgcaaaggctat 529
Query: 414 ttccaaaatccttaagtaagtttttctactagcctt-aaaagtatattttgtcttaagaa 472
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 528 ttccaaaatccttaagtaagtttttctactagccttaaaaagtatattttgtcttaagaa 469
Query: 473 attctttaaaagaataataacatagatgtgtagaaataaaatgcagtggtagacactgaa 532
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 468 attctttgaaagaataatatcatagatgtgtagaaataaaatgcagtggcagacactgaa 409
Query: 533 tgtatcttccctagatctttattaggccagtaagttcaactccatctcctcctgtaagtg 592
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtgtctttcctagatctttattaggccagtaagttcaactccatctcctcctgtaagtg 349
Query: 593 tggactgcaaaccattcatagctgtatggtttctaaagattttttt 638
||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 348 cggactgcaaaccattcatagctgtatgatttttaaagattttttt 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_b17.g1 MSMg01no110_b17.g1 CHROMAT_FILE:
MSMg01no110_b17.g1 PHD_FILE: MSMg01no110_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(291 letters)
>mm_chr15_44296563_44297255
Length = 693
Score = 532 bits (275), Expect = e-155
Identities = 286/293 (97%), Gaps = 7/293 (2%)
Strand = Plus / Plus
Query: 1 atggtatttgggggggggggggctccactcttggctccatgtctaagaatgattgtaaaa 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atggtatttgggggggg-----ctccactcttggctccatgtctaagaatgattgtaaaa 260
Query: 61 gggtaactgcagccatatgactcatcaaaaaaaaaaaa--ggcaattatgacttctgacc 118
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gggtaactgcagccatatgactcatcaaaaaaaaaaaaaaggcaattatgacttctgacc 320
Query: 119 cctgagagatgaaggttgccattaccctgttagcttcggcactgtgtaatgagagacagc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgagagatgaaggttgccattaccctgttagcttcggcactgtgtaatgagagacagc 380
Query: 179 gataaagggtatcaagaaagagacatgatcaatattaattacagactggagactagcaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataaagggtatcaagaaagagacatgatcaatattaattacagactggagactagcaag 440
Query: 239 cagccatgggcttgtaacttacctttctaactctcttgtagtggatgtttagt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagccatgggcttgtaacttacctttctaactctcttgtagtggatgtttagt 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space: 192888
Effective search space used: 192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
