BAC Information

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BAC

Clone NameMSMg01-110F06
Chromosome15 (Build37)
Map Location 9,276,156 - 9,276,433
singlet/doubletsinglet
Overlap geneUgt3a2
Upstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661
Downstream geneLOC383094, Capsl, Il7r, C230086A09Rik, Prlr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F06.T7 (MSMg01no110_f06.b1)MSMg01-110F06.TJ (MSMg01no110_f06.g1)
ACCAG323282AG323283
length726701
length of high quality
(start - end)
283 (46 - 328)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no110_f06.b1 PHD_FILE: MSMg01no110_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:53 2005CHROMAT_FILE: MSMg01no110_f06.g1 PHD_FILE: MSMg01no110_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATATTTAAGGATAAACACATACTTTAATTTCCTTAGACCCACT
AGTAGTGAACCGACTTCACCTTACATAGTGAATGAAAATGTTATACTTTG
AGTTCTTCTGGATTAAAGTGAACAGTGCTGTTAGGGAAAGAAAGGCCTGC
ATTCTAATCTGGAAAATGAACTCTGAATGAGGGACTTCATTACATTTATC
TATCTGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTTCTGT
TTTATCTAATCTTCACTACAAATAAGAACCAGTCTGCTAGAAGGGATAAA
GGTTGCCTGGTAATCATGAACAATTATAAAAACATGTCCTAGCCTGAATA
TTTATATCAAATCACTAAGGATCAGTGGTGTTATTGCATTCATCTACCAA
AACAAGATTGTTTACTTAAGATGTATGCTTGATATGAAGTGAGGCATACA
CTTATTGATACATTGCTCAGCTGTTAAAGTTTTTGCTCCGTATTCTAAGC
CTTAACACCGCATGCCGCAATTCCAATTCTTTTTGCCCCATATTTATTAT
TACTTAAAAACTCCCCCCCGGACAATCAATAATCTACACTAAATTTTAGT
GATTATTATCTCACCTAATTTTCTTAATTTATATTAAAACAACCCTACCC
CTAAATCGTTTATAATTTTCGCCCTA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGG
TAATGAAGTGTTCCCACAACACAGACTGTTGAGAAGGATTCAACTGCGTG
AATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTA
CAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTT
CTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTA
CAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTT
CTCTAGTGTTAGGAGCCTTTTTGTTCTTTTTCACATGTTATCAAGTGGTT
AAGGTAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGT
AAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAATA
AGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTAGGTCA
GGTAAGAATACCTGGCGAGAGATTAGAAGGAAGGAGAAGGAATAAGAACA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f06.b1 MSMg01no110_f06.b1 CHROMAT_FILE:
MSMg01no110_f06.b1 PHD_FILE: MSMg01no110_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:53 2005
         (283 letters)



>mm_chr15_9276036_9276717
          Length = 682

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatatttaaggataaacacatactttaatttccttagacccactagtagtgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattctcatatttaaggataaacacatactttaatttccttagacccactagtagtgaa 339

                                                                       
Query: 65  ccgacttcaccttacatagtgaatgaaaatgttatactttgagttcttctggattaaagt 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 338 ccgacttcaccttacatagtgaatg-aaatgttatactttgagttcttctggattaaagt 280

                                                                       
Query: 125 gaacagtgctgttagggaaagaaaggcctgcattctaatctggaaaatgaactctgaatg 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaacagtgctgttagggaaaggaaggcctgcattctaatctggaaaatgaactctgaatg 220

                                                                       
Query: 185 agggacttcattacatttatctatctgttttttgtttgtttgtttgtttgtttgtttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agggacttcattacatttatctatctgttttttgtttgtttgtttgtttgtttgtttgtt 160

                                                  
Query: 245 tttgtttctgttttatctaatcttcactacaaataagaa 283
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 159 tttgtttctgttttatctaatcttcactataaataagaa 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)