BAC Information

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BAC

Clone NameMSMg01-110H21
Chromosome15 (Build37)
Map Location 62,874,594 - 62,875,142
singlet/doubletsinglet
Overlap genenone
Upstream genePvt1, LOC100040584, H2afy3, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110H21.T7 (MSMg01no110_h21.b1)MSMg01-110H21.TJ (MSMg01no110_h21.g1)
ACCAG323405AG323406
length1,255697
length of high quality
(start - end)
---549 (74 - 622)
definitionCHROMAT_FILE: MSMg01no110_h21.b1 PHD_FILE: MSMg01no110_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:06 2005CHROMAT_FILE: MSMg01no110_h21.g1 PHD_FILE: MSMg01no110_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTCTGTTGTTTTNTNNCTTNTTCTTTGTNTCTTCTCTCTGTGTCTC
TCTCTTCTCTCCTCCNTCGNCCCCTTCTTTCTCCCCAGCGGAGTCCTCGC
GTNTTNNTTCTTTCCCCCGCNCGTCGTCTCTGTCGNCGCCGCCCGCCCTT
CCTTCTTTTGCCTTTTTCCTCCCTGCCCCTCTCCTGCTCTCGTCCTCTTT
TTCTGTNATACTTTNNNNTCGACATAATCTCTCTATGCTTCATTGCTATT
TGTGTATATATCACACTANTCTCATCCCCCGACCACATTCTACTGCCTTT
ATNTTACTCTCTTCTCACATCTTACTCTTATTTATCACCTTAACGTTATC
TACACTCCGCCCTCCCCTCCCACCCCCCCCTCCTCACCAATCTCATTACC
CTATGACACCCCCACACCTGCTACTCTCTCACCCTATTTACCACTTTAAC
GTCACATCCCCAGTTTTTCTTTATCTCTCCCCTCCCCATTCTTTTTATTT
TCTCCTTACAATTATTATTATTTCTCTCTCTCTTCTCACTATTCTCCTCC
ACAATCTCACTTAACCCTCTCATTATGTTCATAACTCCTTATCTTCTAAT
CATCGCATCACTTCCCTACGACCTCCTTTCACATTATCTCCATCTATATG
ACTAGCAGCCGTCTTATTGCTCCTCATTCGTATCTGCCCCTGTTCTTTCA
TACGTCATTTTCAATTGACATCATCCCTCATCTCCTCTTGTCTCCTCTCT
GTCTTTCATCCTCGTATCATAACTTCTCATCTCACCTCGCCTCTCCTTCT
CCTTCTTCTGTCACTACGTTCATCTATCTCTCAATCAGTCTCATGTGTGT
GCACTTACCCACACTCAATCGTTATCTGCAGTTGTGACATGTCTATACAG
CTTCTATATCCGCGAGCAGTTNTAGTTGCTCACGCGTATCTGATCATACG
GTCCATTCGCATAGGCTATTACATATCTGGCCACTATTACCGATCTCCTT
GTCTCTGGCCTCGCCTACCCTACACTCTCATCTTCTTCCCACCGCGCTCA
TCTCACTGGTTTCTTATCATGTGCTTNAGTATATATCGACATTAATGTGN
TACACATGCTAGTCTATCCGTCTATAGACGTATACATCTCTATCTATTCG
ATGCATCCACATCTGCTTACCGCGCTACGTCCGCCACACCACTAGTCCTC
TCTATATGCCAATTACCACTGTTCGTCTTCGACCGTGNTTCGTGCTCGTC
TAGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATGAGAATTTAGGCTGATGTGGCTT
TCCCAAATGCCTTCTCGCAAAGAATGACCACACATTCCACAGAAGCAGCT
CTTGGAGAGATGAAAGCAATTTTTGCTAAGAGTAGCTGATGTTGGTTTTG
AATCCCACAAAGCATATTTAGATCATTTCTGGATGTGAAATCCAGTTTGG
GAGATAGAGATAAATGATCTGAAACATATATATGATTTAAGGGAGAATAG
AATTTAGTCTGAATCATATTTATTCACAAGATTTTGGTTATATAATAATA
CCACTGAATATATTTATCTACTACCACTACTGATAATACATAGCCAAATC
TCCAATCACAATTCATAACCTAATTAACTTATAAAGGGAAAGATGATTTT
GTAGTTTGTTAACTGCATGGACTGAACTTTACACGGATTGAAGTTCCTGA
GGCTCTCTGCAGTCTTAGGATAAATCGTCACGTGTTTCCCTGAAGAATAG
TTAATGTCTTTGCTTACAGAAAGCTGCCATAGACCCTAGTTGGGTTTTTG
ACATGCACATCTCCCTTTCCACAGTGGTCAAAAGGTATTACCTTTCTAAT
GTATGAGAGACCTTACATTCACAAGAATAATCTGTCATGATTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_h21.g1 MSMg01no110_h21.g1 CHROMAT_FILE:
MSMg01no110_h21.g1 PHD_FILE: MSMg01no110_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:06 2005
         (549 letters)



>mm_chr15_62874394_62875342
          Length = 949

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgagaatttaggctgatgtggctttcccaaatgccttctcgcaaagaatgaccacac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 749 tcatgagaatttaggctgatgtggctttcccaaatgcctactcgcaaagaatgaccacac 690

                                                                       
Query: 61  attccacagaagcagctcttggagagatgaaagcaatttttgctaagagtagctgatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 attccacagaagcagctcttggagagatgaaagcaatttttgctaagagtagctgatgtt 630

                                                                       
Query: 121 ggttttgaatcccacaaagcatatttagatcatttctggatgtgaaatccagtttgggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggttttgaatcccacaaagcatatttagatcatttctggatgtgaaatccagtttgggag 570

                                                                       
Query: 181 atagagataaatgatctgaaacatatatatgatttaagggagaatagaatttagtctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atagagataaatgatctgaaacatatatatgatttaagggagaatagaatttagtctgaa 510

                                                                       
Query: 241 tcatatttattcacaagattttggttatataataataccactgaatatatttatctacta 300
           ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 509 tcagaattattcacaagattttggtcatataataataccactgaatatatttatctaata 450

                                                                       
Query: 301 ccactactgataatacatagccaaatctccaatcacaattcataacctaattaacttata 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcactactgataatacatagccaaatctccaatcacaattcataacctaattaacttata 390

                                                                       
Query: 361 aagggaaagatgattttgtagtttgttaactgcatggactgaactttacacggattgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagggaaagatgattttgtagtttgttaactgcatggactgaactttacacggattgaag 330

                                                                       
Query: 421 ttcctgaggctctctgcagtcttaggataaatcgtcacgtgtttccctgaagaatagtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcctgaggctctctgcagtcttaggataaatcgtcacgtgtttccctgaagaatagtta 270

                                                                       
Query: 481 atgtctttgcttacagaaagctgccatagaccctagttgggtttttgacatgcacatctc 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgtctttgcttacagagagctgccatagaccctagttgggtttttgacatgcacatctc 210

                    
Query: 541 cctttccac 549
           |||||||||
Sbjct: 209 cctttccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)