MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-110K04
Chromosome	15 (Build37)
Map Location	38,553,235 - 38,553,753
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ncald, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2
Downstream gene	Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ncald (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52589 MGI:1196326
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667534 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667534
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 1 Protein pseudo : _no_value

name	Rrm2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382985 MGI:2155865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041478 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041478
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 1089 ESTs, 9 Proteins

name	Edd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70790 MGI:1918040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Odf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18285 MGI:97424
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC382986 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 9 Proteins pseudo : _no_value

name	LOC667563 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667563
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Klf10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21847 MGI:1101353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Azin1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54375 MGI:1859169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Siah1-ps2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20436 MGI:108065
definition	gene_synonym : Sinh-1D; Sinh1-ps2 note : seven in absentia 1, pseudogene 2 pseudo : _no_value

name	Atp6v1c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66335 MGI:1913585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Baalc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:118452 MGI:1928704
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	TOB3L (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:170769
definition	note : TOB3-like pseudo : _no_value

name	Fzd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14368 MGI:108474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC636952 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:636952
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 315 ESTs, 20 Proteins pseudo : _no_value

name	Cthrc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68588 MGI:1915838
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69906 MGI:1917156
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdsof1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223499 MGI:2684929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671215 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671215
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins pseudo : _no_value

name	Rims2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116838 MGI:2152972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ncald (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372717 GeneID:52589 MGI:1196326
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurocalcin delta transcript_id : NM_134094.3

name	Rrm2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41054951 GeneID:382985 MGI:2155865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribonucleotide reductase M2 B (TP53 inducible) transcript_id : NM_199476.1

name	LOC100041478 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266478 GeneID:100041478
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 1089 ESTs, 9 Proteins product : similar to ribosomal protein L23a transcript_id : XM_001476133.1

name	Edd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486932 GeneID:70790 MGI:1918040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E3 ubiquitin protein ligase, HECT domain containing, 1 transcript_id : NM_001081359.1

name	Odf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364780 GeneID:18285 MGI:97424
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : outer dense fiber of sperm tails 1 transcript_id : NM_008757.2

name	Klf10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130846 GeneID:21847 MGI:1101353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kruppel-like factor 10 transcript_id : NM_013692.2

name	Azin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376569 GeneID:54375 MGI:1859169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : antizyme inhibitor 1 transcript_id : NM_018745.3

name	Atp6v1c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803358 GeneID:66335 MGI:1913585
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit C1 transcript_id : NM_025494.2

name	Baalc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205392 GeneID:118452 MGI:1928704
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brain and acute leukemia, cytoplasmic transcript_id : NM_080640.4

name	Fzd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542830 GeneID:14368 MGI:108474
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : frizzled homolog 6 (Drosophila) transcript_id : NM_008056.2

name	Cthrc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353090 GeneID:68588 MGI:1915838
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : collagen triple helix repeat containing 1 transcript_id : NM_026778.2

name	Slc25a32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802666 GeneID:69906 MGI:1917156
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25, member 32 transcript_id : NM_172402.2

name	Wdsof1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348457 GeneID:223499 MGI:2684929
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeats and SOF domain containing 1 transcript_id : NM_198606.1

name	Rims2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716606 GeneID:116838 MGI:2152972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulating synaptic membrane exocytosis 2 transcript_id : NM_053271.1

name	Rrm2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41054952 CCDS:CCDS27437.1 GeneID:382985 MGI:2155865
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity [Evidence IDA] GO_process : GO:0009186 - deoxyribonucleoside diphosphate metabolism [Evidence IEA]; GO:0009263 - deoxyribonucleotide biosynthesis [Evidence IDA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : ribonucleotide reductase M2 B (TP53 inducible) protein_id : NP_955770.1

name	LOC100041478 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266479 GeneID:100041478
definition	codon_start : 1 product : similar to ribosomal protein L23a protein_id : XP_001476183.1

name	Edd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486933 GeneID:70790 MGI:1918040
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence ISS]; GO:0004842 - ubiquitin-protein ligase activity [Evidence ISS] [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0050847 - progesterone receptor signaling pathway [Evidence ISS]; GO:0006464 - protein modification [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence ISS] codon_start : 1 note : extraembryonic development; hyperplastic discs protein product : extraembryonic development protein protein_id : NP_001074828.1

name	Odf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679164 GeneID:18285 MGI:97424
definition	GO_component : GO:0001520 - outer dense fiber [Evidence IDA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : outer dense fiber of sperm tails 1 protein_id : NP_032783.1

name	Klf10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305571 CCDS:CCDS27438.1 GeneID:21847 MGI:1101353
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030282 - bone mineralization [Evidence IMP]; GO:0045672 - positive regulation of osteoclast differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : early growth response, alpha-like; TGFB inducible early growth response 1 product : Kruppel-like factor 10 protein_id : NP_038720.1

name	Azin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055298 GeneID:54375 MGI:1859169
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0006596 - polyamine biosynthesis [Evidence IEA]; GO:0006595 - polyamine metabolism [Evidence TAS] codon_start : 1 note : ODC antizyme inhibitor; ornithine decarboxylase antizyme inhibitor product : antizyme inhibitor 1 protein_id : NP_061215.1

name	Atp6v1c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384916 CCDS:CCDS27439.1 GeneID:66335 MGI:1913585
definition	GO_component : GO:0016469 - proton-transporting two-sector ATPase complex [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA] [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence ISS] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence ISS] [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ATPase, H+ transporting, V1 subunit C, isoform 1 protein_id : NP_079770.1

name	Baalc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21687035 GeneID:118452 MGI:1928704
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : unclassified translation discrepancy product : brain and acute leukemia, cytoplasmic isoform 1-6-8 protein_id : NP_542371.1

name	Fzd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542831 CCDS:CCDS27441.1 GeneID:14368 MGI:108474
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004926 - non-G-protein coupled 7TM receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0001736 - establishment of planar polarity [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0001843 - neural tube closure [Evidence IGI]; GO:0007165 - signal transduction [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : frizzled 6 protein_id : NP_032082.2

name	Cthrc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625696 CCDS:CCDS27442.1 GeneID:68588 MGI:1915838
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : collagen triple helix repeat containing 1 protein_id : NP_081054.1

name	Slc25a32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369517 CCDS:CCDS27443.1 GeneID:69906 MGI:1917156
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial folate transporter/carrier protein_id : NP_765990.1

name	Wdsof1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348458 GeneID:223499 MGI:2684929
definition	codon_start : 1 exception : mismatches in translation product : WD repeats and SOF domain containing 1 protein_id : NP_941008.1

name	Rims2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716607 GeneID:116838 MGI:2152972
definition	GO_component : GO:0045202 - synapse [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0017156 - calcium ion-dependent exocytosis [Evidence IDA]; GO:0019933 - cAMP-mediated signaling [Evidence IDA]; GO:0006887 - exocytosis [Evidence IEA]; GO:0030073 - insulin secretion [Evidence IDA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Rab3 interacting protein 1; synaptotagmin 3, related sequence; Rab3 interacting protein 2; synaptic exocytosis regulator 2 product : regulating synaptic membrane exocytosis 2 protein_id : NP_444501.1

name	LOC667563 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667563
definition	number : 2 pseudo : _no_value

name	LOC667563 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667563
definition	number : 1 pseudo : _no_value

name	LOC667534 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266477 GeneID:667534
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 1 Protein product : similar to ribosomal protein S19 pseudo : _no_value transcript_id : XR_032592.1

name	LOC382986 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266480 GeneID:382986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 9 Proteins product : similar to Ferritin light chain 1 (Ferritin L subunit 1) pseudo : _no_value transcript_id : XR_032597.1

name	LOC636952 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266563 GeneID:636952
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 315 ESTs, 20 Proteins product : similar to HIStone family member (his-71) pseudo : _no_value transcript_id : XR_030547.1

name	LOC671215 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266564 GeneID:671215
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 9 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_030565.1

clone name	MSMg01-304M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440L17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-524I11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-135B21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-364A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517F17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-313I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052N24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-316O21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-170M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084L21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-110K04.T7 (MSMg01no110_k04.b1)	MSMg01-110K04.TJ (MSMg01no110_k04.g1)
ACC	AG323509	AG323510
length	716	1,146
length of high quality (start - end)	538 (62 - 599)	---
definition	CHROMAT_FILE: MSMg01no110_k04.b1 PHD_FILE: MSMg01no110_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:17 2005	CHROMAT_FILE: MSMg01no110_k04.g1 PHD_FILE: MSMg01no110_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:17 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCCCCCGGCTCCNNNAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXCGCGGAATTCCCTGTGTTTCAGTTATTTGTTAATCTTCT ATTTACCAAACTTCTAGAGTTTGTGCTGTCTGTAATTTTCTACCCCATTT GCAGAATGTTCTTGGTCTTTTTATGAGAACAAGAACAGAGTACAGCTGCC TGTTTGTTAATACGAGTCACAAACCAAGGTTACAGTGGGAAGCCACAGAA ATCATGAATTAACTTTTAGTCTTTATCAGTAAATGTTAATGAAGCCTGGT CCAGTGGAACCTGCTGGTAAGTGAAGGAGAAAGGTGGAAGAACTGGGACT CAAGGACTTATGCACACTGTTGGGGGTGGCGTTAATGGAGGCAGCTTGTT GCTGTGCCTGATTAAATTCTGTATCCCAAGGTCTAGTTGGCTCAGGGCAA GTGAATTCTTACAAATACCAGCTTTTGTAGTTGTGCAAGCTTTACTCCTT AATTTAAAACAATTGTTTAATAAAGGTGCCTACAGCTTGTAACAGGGCTG AAGAGAGGTAGGTTAGGCGGGGCTTCAGTTGCTGGTCTTGGGGTCTAAGG CAGAGATAGGAGGATGAGAGGGCAGAGAAGAACTGAAAGGTTGCCATGCC GCATTTGTATCTTTGAACCTTGATTTTTTAACTCTTGCCATACTGTTCTT TTTTGTTTTCCCCTCT	CCTCCTCTCACTNCTCTCGTGCCGCGCAGCGACACCCATTNTATTCTTCG CGCTACCGCTTGTGACCATGACGTCCTTCTACACTCACTTATATTCTCCC CATGTAATGTAACGCTCACCCCACTCAACACACTAAACCCCGGCGGTGAG TACAAGTGTGTCTCGCGTGCTTTCCTCCTCTTCACATATANAATATACTT NTTTCACGGTACAGCGTTCGTCGCCTGGTGACCAGGTGCGAGGACGTTTT GTTGTGGACTGTCGTGGAGGAGGAAGAGATGGGGTGTAGCTGGGCGCCGC GTATATCATATTCCGCACGAGTAAGGAGATGCGACCGACAACCGCTNCAT TTCCGCCGCGCGTCCGATCTGCGCGCTCTTCTGCCGCGCTCGTCTGTTGT TTGTGTCCCGCCGCCTGTATCATCNTTGCTCTCTCTTGATTGCAGAAGTG TGTTTTCTCGCCTCACCTCCGTAATCTGTTATACATCACACCCACCAATA TTGTAGCAGGACGAGGGACGAGAGAATGCGACGACTCGTCGTACCTGACC CTATCCGTCGTGTGTTGGCGCTACCCGTATTAACGTTCTATCGCACGCTC CTCGCTCTTGTCTGTTGTACCATAATGCACTATCGTAGTGTGGGCGACGC TGCGCAGGTGGGTGAGAGCGGTAGAGGTGACTGGAGACGCGGCGGAGTGT TATGTTTTGTATGTACGACGGAGTACTATATTCGTTACTGTCTTATCAAC GACCTCTCGCCGCCCCCGTTTTTCTACACGCCAGGAGTGTTTGTAGCGTG TATATCATATATAATGCGCGGGCGTCGCGGCTGGGCGTCGTGTGGGTTGT AGTCGTCGTGTTCCGATGATTATGTATCAGCGGGGCGGCCTGGTTCGCGC GTATATTGTGTGCGCCCGTGACGCGGGCGTAGTCAGTCTGGGCGCGTGAT GATCGGTCGCGCGATGATCACGCGGCTTGTATTGTCTCTAATGCGCGCCA TGACCACCTTTATATGTGTATTGCAGTGTAACATGCGCGCGCTCTCGCCG CTGTGACTGAGGTCGTTGATTACACGAATATCTGCGTACACCGTCGTATA TATATATGCTTGCTCGCTCCCTCCNCCTCGCTATCGTCGCCGCCGG
quality values	Open. Hide. 0 3 7 6 6 9 10 9 8 8 8 3 0 0 0 3 10 9 9 10 16 13 18 17 16 16 25 31 33 32 37 31 31 39 23 23 25 28 28 28 43 27 21 10 9 9 22 19 9 9 9 9 17 22 39 39 28 29 28 24 24 35 34 50 50 36 36 36 50 50 50 57 57 57 57 48 42 47 28 19 18 14 14 32 42 57 48 42 42 42 43 43 51 53 68 68 68 68 68 68 68 68 68 68 50 50 50 46 46 50 50 50 51 68 57 57 47 47 47 57 57 50 57 57 57 51 51 51 51 51 51 57 57 57 57 57 50 57 57 57 57 57 68 68 68 68 68 50 51 68 68 68 68 57 50 50 50 50 50 50 50 57 57 52 57 57 57 68 68 68 68 51 50 50 50 57 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 59 59 59 57 57 57 57 57 57 57 57 68 57 57 57 57 52 57 57 57 57 57 57 57 57 57 52 52 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 52 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 52 43 62 39 43 43 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 45 45 45 52 52 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 52 52 52 52 62 62 62 62 52 52 52 33 33 9 9 11 28 33 57 52 57 57 57 52 52 45 52 52 52 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 47 47 43 43 43 44 43 18 18 12 12 12 26 21 29 36 43 43 43 52 43 50 37 42 42 33 33 42 42 43 43 43 46 57 57 57 57 57 43 43 24 27 44 44 59 57 57 46 43 43 43 59 59 59 59 59 59 57 57 57 59 59 44 47 47 59 59 59 59 59 48 48 54 57 54 57 54 48 48 48 48 48 47 59 59 48 39 42 39 41 41 39 42 39 39 32 42 39 43 43 43 43 33 39 30 32 32 32 24 21 18 18 18 22 29 39 37 26 24 18 18 22 26 28 22 22 28 32 34 25 20 23 23 31 28 35 35 37 32 32 35 37 37 30 30 28 26 22 16 11 11 11 25 34 39 30 30 30 37 37 39 30 26 15 17 23 23 22 20 17 24 24 30 37 26 26 14 14 14 28 15 12 12 12 12 25 24 15 15 13 12 12 12 12 13 13 13 12 16 11 11 11 11 12 11 11 11 11 11 10 8 8 6 6 6 6 10 10 10 11 18 15 15 11 11 11 11 11 11 11 9 9 12 18 15 21 15 10 10 9 7 11 8 8 8 7 7 10 10 8 8 8 9 15 18 15 15 10 10 10 9 9 9 9 10 10 12 10 8 6 8 6 6 8 8 8 9 9 9 9 10 10 11 11 9 9 11 10 8 8 8 10 8 8 8	Open. Hide. 8 8 8 8 8 8 8 8 8 8 8 3 0 3 8 8 8 8 6 6 8 11 12 11 13 8 10 8 7 7 8 8 8 6 6 8 8 6 6 3 0 3 9 8 6 6 6 8 8 8 8 8 8 8 8 9 13 10 9 6 7 6 6 6 6 6 6 6 6 8 8 8 6 6 8 7 8 8 8 8 8 6 9 6 6 6 6 6 6 8 8 8 8 8 10 12 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 8 8 8 9 9 9 8 6 8 6 7 8 8 8 10 9 6 6 6 6 8 8 13 10 12 13 10 10 10 6 6 6 6 6 6 6 6 6 6 8 8 6 6 8 6 10 10 11 8 8 6 6 8 8 6 6 8 8 8 6 8 10 10 12 8 8 9 10 11 11 11 3 0 3 11 11 12 8 8 8 10 3 0 3 8 8 8 8 8 8 8 8 12 8 6 6 8 10 8 8 8 6 6 6 6 8 7 8 8 8 6 8 8 6 6 6 6 8 7 7 6 6 6 6 8 6 6 6 8 10 11 11 10 10 10 8 8 8 8 8 8 10 9 7 6 8 8 6 6 8 6 6 6 8 8 6 6 6 6 6 6 6 6 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 12 12 9 8 8 8 8 6 6 6 6 6 6 6 7 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 8 8 6 6 6 6 6 8 8 8 8 8 8 8 3 0 3 8 8 11 12 13 6 6 6 6 9 10 9 9 8 8 8 10 8 8 8 10 8 9 8 8 8 6 6 8 8 10 11 15 10 8 8 7 6 8 8 6 6 6 6 6 8 8 6 6 6 6 6 10 9 9 10 11 9 8 7 8 6 6 8 8 8 6 8 8 8 8 9 6 7 8 3 0 3 6 6 8 6 10 12 15 9 7 7 8 8 10 8 7 7 6 6 6 6 8 9 10 8 6 6 6 8 8 10 10 11 11 10 9 8 8 7 7 6 8 8 8 8 8 6 6 6 6 6 6 8 12 8 10 10 10 10 10 12 10 13 9 9 9 8 6 6 6 10 8 8 8 6 6 8 6 8 10 8 8 8 8 8 8 6 6 6 6 7 7 6 6 6 8 8 9 8 10 8 8 8 10 11 8 8 6 6 8 8 11 8 8 6 6 8 7 8 9 9 12 10 8 8 6 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 11 10 8 8 6 6 6 7 13 13 8 8 8 8 8 6 8 6 8 8 8 9 8 8 8 8 8 8 8 8 6 6 10 6 9 10 8 10 11 8 6 6 6 6 6 6 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 12 12 8 8 8 8 9 10 9 9 7 8 10 8 8 8 8 8 9 9 11 9 9 9 9 9 8 10 8 8 6 6 6 6 6 8 8 8 8 11 11 11 8 8 8 9 10 9 8 8 8 10 9 8 10 10 9 8 8 8 8 9 9 9 12 8 8 8 8 6 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 6 6 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 11 11 11 16 8 7 8 8 7 7 8 8 8 8 8 8 10 8 8 10 8 8 8 8 8 8 8 6 6 6 6 8 8 10 11 10 8 8 8 8 8 8 9 10 8 8 8 8 8 8 8 8 8 8 8 8 7 6 6 6 8 8 8 8 8 8 8 9 9 6 6 6 8 6 6 6 6 8 8 8 7 6 6 8 10 13 10 10 8 8 8 6 8 6 6 6 10 10 8 8 8 8 8 10 9 9 9 9 9 9 10 8 6 6 6 6 6 8 10 8 6 6 6 6 6 6 9 9 8 10 12 8 6 6 6 6 12 13 10 10 9 9 8 8 8 8 8 8 10 8 8 6 6 6 6 6 6 6 6 8 8 6 7 8 6 8 8 8 10 8 8 8 8 12 8 6 6 8 8 8 8 10 8 8 9 10 8 8 8 8 8 6 7 13 7 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 8 8 8 6 6 6 6 8 6 8 10 8 9 10 10 9 9 9 9 9 12 13 10 11 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 14 14 13 9 12 10 13 10 9 9 8 8 6 6 6 6 7 8 8 9 10 12 10 10 8 6 6 8 8 14 14 10 10 6 7 6 6 6 6 6 6 8 6 6 6 6 8 6 10 9 10 9 8 8 8 8 6 6 6 8 6 6 7 7 15 12 8 8 6 6 8 6 8 8 6 6 7 6 6 6 10 11 13 8 8 6 6 6 6 6 6 6 8 8 8 6 6 6 8 8 8 6 6 6 11 6 6 6 3 0 3 8 8 8 8 8 8 8 9 10 9 9 8 8 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no110_k04.b1 MSMg01no110_k04.b1 CHROMAT_FILE:
MSMg01no110_k04.b1 PHD_FILE: MSMg01no110_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:17 2005
         (538 letters)



>mm_chr15_38553235_38554173
          Length = 939

 Score =  862 bits (446), Expect = 0.0
 Identities = 499/522 (95%), Gaps = 13/522 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccctgtgtttcagttatttgttaatcttctatttaccaaacttctagagtttgtgc 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aattccctgtgttttagttatttgttaatcttctatttaccaaacttctagagtttgtgc 460

                                                                       
Query: 66  tgtctgtaattttctaccccatttgcagaatgttcttggtctttttatgagaacaagaac 125
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 459 tgtctgtaattttctaccccatttgcagaatgttcttggtc--tttatgagaacaagaac 402

                                                                       
Query: 126 agagtacagctgcctgtttgttaatacg---agtcacaaaccaaggttacagtgggaagc 182
           ||||||||||||||||||||||||||||   |||||| |||| |||||||||||||||||
Sbjct: 401 agagtacagctgcctgtttgttaatacgaacagtcacgaaccgaggttacagtgggaagc 342

                                                                       
Query: 183 cacagaaatcatgaattaacttttagtctttatcagtaaatgttaatgaagcctggtcca 242
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 cacagaaatcatgaattagcttttcgtctttatcagtaaatgttaatgaagcctggtcca 282

                                                                       
Query: 243 gtggaacctgctggtaagtgaaggagaaaggtggaagaactgggactcaaggacttatgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtggaacctgctggtaagtgaaggagaaaggtggaagaactgggactcaaggacttatgc 222

                                                                       
Query: 303 acactgt------tgggggtggcgttaatggaggcagcttgttgctgtgcctgattaaat 356
           |||||||      ||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct: 221 acactgttgggggtgggggtggagttaatggaggcagcttgttgctgtgcgtggttaaat 162

                                                                       
Query: 357 tctgtatcccaaggtctagttggctcagggcaagtgaa-ttcttacaaataccagctttt 415
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 161 tctgtatcccaaggtctagttggctcagggcaagtgaactt-ttacaaataccagctttt 103

                                                                       
Query: 416 gtagttgtgcaagctttactccttaatttaaaacaattgtttaataaaggtgcctacagc 475
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 102 gtagttgtgcaagctttactccttaatttaaaacaattatttaataaaggtgcctacagc 43

                                                     
Query: 476 ttgtaacagggctgaagagaggtaggttaggcggggcttcag 517
           |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 42  ttgtaacagggctgaacagaggtaggttaggcggggcttcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space:   490512
Effective search space used:   490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information