Query= MSMg01no111_b18.b1 MSMg01no111_b18.b1 CHROMAT_FILE:
MSMg01no111_b18.b1 PHD_FILE: MSMg01no111_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:00 2005
(753 letters)
>mm_chr15_56890633_56891784
Length = 1152
Score = 1425 bits (737), Expect = 0.0
Identities = 749/753 (99%), Gaps = 1/753 (0%)
Strand = Plus / Plus
Query: 1 aatcaattagcaatttaacctattgaatttatttcatgttcttttacaaaatttccccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaattagcaatttaacctattgaatttatttcatgttcttttacaaaatttccccat 260
Query: 61 agagattcattaatgaggttttacataatggcaatctctgttttctataggaaaaaaatg 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agagatacattaatgaggttttacataatggcaatctctgttttctataggaaaaaa-tg 319
Query: 121 agaaataccttgataattatatttggtccctgatacaattaatttagaagctgaaatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaaataccttgataattatatttggtccctgatacaattaatttagaagctgaaatgaa 379
Query: 181 gaaacccagtcccagggcattcatggcaattgtcaaaaaataaataaaacaatatactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaacccagtcccagggcattcatggcaattgtcaaaaaataaataaaacaatatactca 439
Query: 241 attaaccccatatcactcagaggataatagcttgtctaaacttcaatcaccttgccccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attaaccccatatcactcagaggataatagcttgtctaaacttcaatcaccttgccccct 499
Query: 301 taaacctgctttgaaatctctgcttctggttctttcagaggcatctctatttgctatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaacctgctttgaaatctctgcttctggttctttcagaggcatctctatttgctatgtc 559
Query: 361 tctagacttctttctggcaaatagtgacaatcaagaataagacctttaaactgagattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctagacttctttctggcaaatagtgacaatcaagaataagacctttaaactgagattta 619
Query: 421 aaacagcttgggctaactgcccagagctcctggtgtgggggaaaactgaatcatcttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaacagcttgggctaactgcccagagctcctggtgtgggggaaaactgaatcatcttcca 679
Query: 481 agaattctattaacaactactatgagaaagatgtcctgagatacaatttgtaaaatcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaattctattaacaactactatgagaaagatgtcctgagatacaatttgtaaaatcatt 739
Query: 541 ttcagggggcttgtgacagtcatcaaatcaagcaaaatcataaagaagacatataaaaca 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 740 ttcagggggcttgtgacagtcatcaaatcaagcgaaatcataaagaagacatataaaaca 799
Query: 601 aagattccttgaactctcacttgcatgaccacatgttttatattgtcccacaccctaaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagattccttgaactctcacttgcatgaccacatgttttatattgtcccacaccctaaat 859
Query: 661 cttagctttagcctggaaagtcatatgtgatgaagcctatttccaggaaaacttggcgaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 860 cttagctttagcctggaaagtcatatgtgatgaagcctatttccaggaaaacttggcaaa 919
Query: 721 caccctgctccctgggcaagatgtgtatgtaaa 753
|||||||||||||||||||||||||||||||||
Sbjct: 920 caccctgctccctgggcaagatgtgtatgtaaa 952
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1152
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1142
Effective search space: 848506
Effective search space used: 848506
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_b18.g1 MSMg01no111_b18.g1 CHROMAT_FILE:
MSMg01no111_b18.g1 PHD_FILE: MSMg01no111_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:00 2005
(785 letters)
>mm_chr15_56986802_56987988
Length = 1187
Score = 1326 bits (686), Expect = 0.0
Identities = 762/788 (96%), Gaps = 4/788 (0%)
Strand = Plus / Minus
Query: 1 caataagagctaggctgtgtctgtgactaccattagagttattgaaagtccatagaagat 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 987 caataagagctaggctgtgtctgtgacta-gattagagttattgaaagtccatagaagat 929
Query: 61 gttaggtagctccattc-aaatctagtcctttatttgggatggagtggtttgaagtgtct 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gttaggtagctccattcaaaatctagtcctttatttgggatggagtggtttgaagtgtct 869
Query: 120 tgatcactccgtctcttaaattaccctctgcaagtggctatcctaggtgtgtacagaaca 179
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 868 tgatcactccatctcttaaattaccctctgcaagtggctatcctaggtatgtacagaaca 809
Query: 180 caatgggatgtaacaagggatggttagatttcttacacagaagcagttttcactagagaa 239
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 808 caatgggatataacaagggacggttagatttcttacacagaagcagttttcactagagaa 749
Query: 240 tgaattaaaatgtccagatataatctgtagggcatcactaaccttagcttcagaaattgt 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgaattaaaatgtccagatgtaatctgtagggcatcactaaccttagcttcagaaattgt 689
Query: 300 ggctgcaattgtccgtgtcaactcatttttgttaaaaatgaaacacagagacagttcaaa 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggttgcaattgtccgtgtcaactcatttttgttaaaaatgaaacacagagacagttcaaa 629
Query: 360 cataaacatgtaagaaacatttcgttgtggaagatctccagagactgctaccatgttgtc 419
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 628 cataaacatggaagaaacatttcattgtggaagatctccagagactgctaccatgctgtc 569
Query: 420 ttttatattttgttaatcatctttcattaattagtttatttatttattgatccagtaaag 479
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 568 ttttatattttgtcaatcatctttcattaattagtttatttattcattgatccagtaaaa 509
Query: 480 caattgtgactattattgtgatatcaaggttataactgtggatatctatgccctctcctc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caattgtaactattattgtgatatcaaggttataactgtggatatctatgccctctcctc 449
Query: 540 caagggtatgcccaataatttgagaaacagcataagaaatatttgtggctatgactacgg 599
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 448 caagggtatgcccaataatttgagaaacagcataagaaatatttgtagttatgattatgg 389
Query: 600 gaaaacacttttgatgatcatgtaaatgacatataagaagcaattggaacacagggataa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaaaacacttttgatgatcatgtaaatgacatataagaagcaattggaacacagggataa 329
Query: 660 gattctaagagtcatatgtagaatatgaaaggcttttggggagtcagcattttagaatgg 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 328 aattctaagagtcatatgtagaatacaaaaggcttttggggagtcagcattttagaatgg 269
Query: 720 gtcaaaaggagagtcaacaacatcccaaagc--gattagtgtgaaccagttccattattc 777
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 gtcaaaatgagagtcaacaacatcccaaagcatgattagtgtgaaccagttccattattc 209
Query: 778 ctgatagt 785
||||||||
Sbjct: 208 ctgatagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1187
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1177
Effective search space: 912175
Effective search space used: 912175
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
