Query= MSMg01no111_c12.b1 MSMg01no111_c12.b1 CHROMAT_FILE:
MSMg01no111_c12.b1 PHD_FILE: MSMg01no111_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:06 2005
(738 letters)
>mm_chr15_51379078_51380215
Length = 1138
Score = 731 bits (378), Expect = 0.0
Identities = 396/402 (98%), Gaps = 1/402 (0%)
Strand = Plus / Minus
Query: 18 gaattcagggtcctgcacaggccatacaaagttctttaccattgaaatgtgttcctagtt 77
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 401 gaattcagggtcctgcacaggctagacaaagttctttaccattgaaatgtgttcctagtt 342
Query: 78 ccctttctactttttatctttgagaaagaatatcaccaagttccttccacaatctcttct 137
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccgtttctactttttatctttgagaaagaatatcaccaagttccttccacaatctcttct 282
Query: 138 taaggcaagtctgtacaccagcctccgaagcagctgggctcacagccctttgacacaggc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaggcaagtctgtacaccagcctccgaagcagctgggctcacagccctttgacacaggc 222
Query: 198 cctgcttcatttctgcctttcctgatgacaagtgtttatcatgtgaatgcagagttctgt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cctgcttcatttctgcctttcctgatgacaagtgtttatcatgtgaatgcagagttctgt 162
Query: 258 caaatgcttttgaagattgatataatcacagttttccttttttttttgtttactaataaa 317
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 161 caaatgcttttgaagattgatataatcgcagttttccttttttttt-gtttactaataaa 103
Query: 318 atgagttctattttcctaggtaaattttacttggtcctggtatatgacacttttcctata 377
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 102 atgagttctattttcctaggtaaactttacttggtcctggtatatgacacttttcctata 43
Query: 378 ttttcattgttaagaatttttaattttccaatttctaggtac 419
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ttttcattgttaagaatttttaattttccaatttctaggtac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space: 821184
Effective search space used: 821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_c12.g1 MSMg01no111_c12.g1 CHROMAT_FILE:
MSMg01no111_c12.g1 PHD_FILE: MSMg01no111_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:06 2005
(708 letters)
>mm_chr15_51253787_51254894
Length = 1108
Score = 1187 bits (614), Expect = 0.0
Identities = 685/724 (94%), Gaps = 30/724 (4%)
Strand = Plus / Plus
Query: 6 acaagagtggtagggacataactc-ggccactaaagcccttgctgttcagaagagaggga 64
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct: 194 acaagagtggtagggacataactcagg-tactaaagcacttgctgttcagaagagaggga 252
Query: 65 ccaagtgtgaatacagaggacccagaagagacctgaccatggcaatgtgtgcctgaaacc 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 253 ccaagtgtgaatacagaggacccagaagagacctgatcatggcaatgtgtgcctgaaacc 312
Query: 125 ttagtatgcataaagagagataggagaaccttccaggagaaccacagggtcttactgagc 184
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 ttagtgttcataaagagagataggagaaccttccaggagaaccgcagggtcttactgagc 372
Query: 185 cagctaccttggcatatgcagaagtaactgacaaaatagatcttgtctcaaatatggtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagctaccttggcatatgcagaagtaactgacaaaatagatcttgtctcaaatatggtgg 432
Query: 245 aag-aaaaaaacaacactcaaatttgtcttctgac-gccccccctcccaccaacctgtgc 302
||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 433 aagaaaaaaaacaacactcaaatttgtcttctgacagcccc--------ccaacctgtgc 484
Query: 303 catg-----------------aca-acacacacacacacacacactctcacacacacaca 344
|||| ||| |||||||||||||||||||| | ||||||||||||
Sbjct: 485 catgccaacacacacacacacacacacacacacacacacacacacacacacacacacaca 544
Query: 345 caccaggatttttaaaattccatgtgactaaattatgctcaatctgtaagaaaaaattaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caccaggatttttaaaattccatgtgactaaattatgctcaatctgtaagaaaaaattaa 604
Query: 405 ttaaattcaaattcaaaagtggatctttatttttagctaacttttcatttcttgctaatc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttaaattcaaattcaaaagtggatctttatttttagctaacttttcatttcttgctaatc 664
Query: 465 aagatgaaggacattttcttgttcaggatacttgttcaagagaaatacatctttgcatgt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aagatgaaggacattttcttgttcaggatacttgttcaagagaaatacatctttgcatgt 724
Query: 525 gaataaggactgagggagaagtgtatttttaaaagtaaaaataggttcctctaaacaata 584
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 725 gaataaggactgagggagaagtgtatttttaaaagtaaaaataggttcatctaaacaata 784
Query: 585 aaaatgctatagcataatcagatgttttatacaataatatttgtggtcaatgaattatgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaaatgctatagcataatcagatgttttatacaataatatttgtggtcaatgaattatgt 844
Query: 645 tctaaaaattgtttctaaaccttttcctgagttgtccaatttccaagatatgaactggaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tctaaaaattgtttctaaaccttttcctgagttgtccaatttccaagatatgaactggaa 904
Query: 705 taca 708
||||
Sbjct: 905 taca 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
