BAC Information

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BAC

Clone NameMSMg01-113B01
Chromosome15 (Build37)
Map Location 56,593,499 - 56,593,750
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843
Downstream geneLOC435442, LOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113B01.T7 (MSMg01no113_b01.b1)MSMg01-113B01.TJ (MSMg01no113_b01.g1)
ACCAG325307AG325308
length703700
length of high quality
(start - end)
573 (42 - 614)251 (157 - 407)
definitionCHROMAT_FILE: MSMg01no113_b01.b1 PHD_FILE: MSMg01no113_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:23 2005CHROMAT_FILE: MSMg01no113_b01.g1 PHD_FILE: MSMg01no113_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTC
TTTGTTCTGCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTGTTGAGTTCTTTATATATGTTGGATATTAGTCCCCATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCACAAACTTTGGAGTTTCATTAGGTC
TTATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGCACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTTATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAA
TAAAGCTTTACGTCAAGCATGCTGATTTCCACAGAGGTTTCTTTATCCCT
GAG
TACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATATGGGGATGAGTTTTAACAAGCATTGAATT
TTAAAACAACTTTTGGCCCATGGTATATAATGAGAGAGAATTTAAGTGCC
TGGCATGAACAGCTGAAAAGACAAAGTGAGTGATGTTGGCAAGATTTAAA
AAAAAATGGGTTCTTTATTTGTCAGAGAGTTGATAAAAGTACTAATTTGA
TATAAATTTTATTTATATGAAAATATTAAAAGAAACAGATGGAAACTAAT
AAAATAATGGAAAGGAAATAGATAATTAAGAAGTTGATCATAGCAGGAAT
GAACTTTTGTCTGTCTAAACCATATACAAAAGACAGATTATCCTGTTGAG
GAACCACATGGCTCCAGCTGGGTGATCTGAACTCTGTGGTCTCTCTGGAC
TGGAGCTCCCGAGTCCCTTGATCATTGTTGCCAGGCTAGGATCATGCAAT
GACCATCCATCCCACGGTCAGCCGTCACCCATTTACATGATTGCATCAAA
ACTCTAAAAAGTTATAATTAAACAAACGGATTTATGTATCAATAAATTCG
CAATTTCCAAGACGCCAAAGAATAATTTTCGGAACCCATTGATGACCATA
AAAACCTGCCTACCTAGGTTAAACAAATAGCCCATTTTTTCTATCCTTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_b01.g1 MSMg01no113_b01.g1 CHROMAT_FILE:
MSMg01no113_b01.g1 PHD_FILE: MSMg01no113_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:23 2005
         (251 letters)



>mm_chr15_56593300_56593950
          Length = 651

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%), Gaps = 1/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacagctgaaaagacaaagtgagtgatgttggcaagatttaaaaaaaaa-tgggttctt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 gaacagctgaaaagacaaagtgagtgatgttggcaagatttaaaaaaaaaatgggttctt 259

                                                                       
Query: 60  tatttgtcagagagttgataaaagtactaatttgatataaattttatttatatgaaaata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatttgtcagagagttgataaaagtactaatttgatataaattttatttatatgaaaata 319

                                                                       
Query: 120 ttaaaagaaacagatggaaactaataaaataatggaaaggaaatagataattaagaagtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaaaagaaacagatggaaactaataaaataatggaaaggaaatagataattaagaagtt 379

                                                                       
Query: 180 gatcatagcaggaatgaacttttgtctgtctaaaccatatacaaaagacagattatcctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatcatagcaggaatgaacttttgtctgtctaaaccatatacaaaagacagattatcctg 439

                       
Query: 240 ttgaggaaccac 251
           ||||||||||||
Sbjct: 440 ttgaggaaccac 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)