BAC Information

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BAC

Clone NameMSMg01-113D10
Chromosome15 (Build37)
Map Location 90,158,697 - 90,158,857
singlet/doubletsinglet
Overlap genenone
Upstream geneMiox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
Downstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D10.T7 (MSMg01no113_d10.b1)MSMg01-113D10.TJ (MSMg01no113_d10.g1)
ACCAG325417AG325418
length695699
length of high quality
(start - end)
239 (112 - 350)161 (74 - 234)
definitionCHROMAT_FILE: MSMg01no113_d10.b1 PHD_FILE: MSMg01no113_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:35 2005CHROMAT_FILE: MSMg01no113_d10.g1 PHD_FILE: MSMg01no113_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGTCTTCCGACTCAGAGACAAGATCTATAAATTCTAACTG
GCTGTATACAGTCTAAAAAGTTAGCTAATTCACTAACTCACATTTAGTAC
TATCACCCTATCCAACTACTCATGGCTGGAAGGATCATAGACCCTAGAAG
AGAAACTACTACTGCCATTTTCCCAAGCCAATATTATTTCTAACTACATA
CTAAAACACTTGCTTTTATACCTGCAAATAAGTATGGTTTTTACCCCTTA
TTTAGGAACTTTTTCTTTTAATCAGAGGTTGTTACAGAGATCTACAACTG
GTCTAACACAAAGCGTAAGTGATCATGGGTGCACAACCCCAAACAACACA
TCTGTAATGCAAGTCCTACACCTAAGTCTCATGGGAAACATCTCACAATA
GATAGACAATACCGTGAGAGCCCGAGAACCATTATATCTCGCTGTGAAAT
AGCGTCTTCTTGACATGTCCGGAAAGCTACCGCCGTGACATCACAACACT
ATGGTTGTCTCCCCCCGACCTACTTAATGTACCCATCAGTTATCACGCTA
TCATGTATGCACCAAACGCCATATGATTCCGTGCCCACGTGACAAGATGT
TTCCCGCCCATTGGACGCTCGAAAAGTGCTACTCTAGCCCCATTA
CATTGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGAAATTGTTTAAGAAGCTAATGTA
TAAAACAATGTTTTTGAAAATCAGAGCTGCATGTTAAACATTTAGACGAT
AATCTAGGTTTCCTGCTACATTTCTGGAACACTGTGGTATATGAGAATGG
GCGTCCCAAGGAAGGGTGAGTTTACCAGGATTTCAGCCATAGTCTTTGAG
AAGTCTTACATGATCAACCAAATTCCTTCGATTCTCTGTCTAACGCAGGA
GGATGCGTTTCACTTTCATATGAAACTGGGGAGTTTGGATGCTGTCATTG
GATTGTACTGCTGAATGTTTTCAGCGTCTAACGTATGGTGAACTCGTCAT
GGCAGTATACAGAGTGCTGTGATTAGCATTAGCTGAAAAAGGGATGTTTT
CCTACTGCTCCATAGAATGACCCACGTACGTGTCATCACGATTATTTCTT
AAATAACATTTTCAATTAATTCTTACATTTTCTCATCCTCATAATATTGA
CATATACAAACTACCTTTCTAGGCACAGTACATACAAAATCTTCCTTGAC
TTTTTCCTTTTATTAATTACCAAATGTTGTCTCACCTGTTTTTTGGAGCT
CACTCCTTGTTGCATTGGACAGTTGTATTGAAGGCGCCTTTCATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d10.g1 MSMg01no113_d10.g1 CHROMAT_FILE:
MSMg01no113_d10.g1 PHD_FILE: MSMg01no113_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:35 2005
         (161 letters)



>mm_chr15_90158497_90159057
          Length = 561

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaattgtttaagaagctaatgtataaaacaatgtttttgaaaatcagagctgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaattgtttaagaagctaatgtataaaacaatgtttttgaaaatcagagctgcatg 260

                                                                       
Query: 61  ttaaacatttagacgataatctaggtttcctgctacatttctggaacactgtggtatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaacatttagacgataatctaggtttcctgctacatttctggaacactgtggtatatg 320

                                                    
Query: 121 agaatgggcgtcccaaggaagggtgagtttaccaggatttc 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatgggcgtcccaaggaagggtgagtttaccaggatttc 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)