BAC Information

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BAC

Clone NameMSMg01-113H03
Chromosome15 (Build37)
Map Location 92,469,527 - 92,607,478
singlet/doubletdoublet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H03.T7 (MSMg01no113_h03.b1)MSMg01-113H03.TJ (MSMg01no113_h03.g1)
ACCAG325581AG325582
length701702
length of high quality
(start - end)
244 (70 - 313)564 (70 - 633)
definitionCHROMAT_FILE: MSMg01no113_h03.b1 PHD_FILE: MSMg01no113_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:52 2005CHROMAT_FILE: MSMg01no113_h03.g1 PHD_FILE: MSMg01no113_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,607,235 - 92,607,478)(92,469,527 - 92,470,090)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAACCAACCGCGGAATTC
TCTATCTTGCTTCATATTCTCAAAACTTCTTTGCTGTTACCAGAAAGTTT
TGATCTTTTGATGTTATCATATGACCCAATTAAAATATATTTTCTGTGTT
CCTATGTTCAGATTTATATATGAAGTGGGTGAGATCTATCACTATCATTT
TATGGTCTTCTGAGTAAGTGGATTGCTTCATGTTTCTGATGGCATGAGTG
CATTAGGCAATGTTGGCATTATGTCCAGTTGGGCATGAAGCATAGTCTCT
TGGTGTTTCTTTGTTTATGTATGGTGAGTACACTCTTTCTGCAGGCCATT
CAAGAGTGAGAACATGGTAGTACTTCAGGCAGGCGTGAGGTGGACAGCCT
TGTATGTGAAATCTATACTGCGTGTCTATACTTACAACAGTGGCACAATT
TCTAGTCCAGTGATAGGAGTATCTTAGGCACTGTTGACTGTTTTATTCAT
TGGCCTCTCTGGATTTGCTAATAGCACTAATACTGTGGGGCTGAAACGCT
GTGTCTTTTTACCAGTAAATCGGAAGGTGATTCCTCTTGAGCCTCCATTA
GCTGAGTAGGCTGATGGCTAGGTTTTCCTTTCTCTTACTCTTTTATGTTT
AGTGTCCATAGAGGGACAAGGGCTGGCACTAGCAAAGTTTCTCATCAGAC
T
TGTAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTAATGGTTTAGTAACTGGAATCAATATA
TGTCTATTACTTCTGTGTCTTTAATTGTTTTTATCTGGAATACTTGATAG
CGAGCCTGAAAATGGCACGGAGAAACACATTCTTCACTGTTTTAAGTGGC
ACTGCGGGGGAGTTCTCAAGAGAACACTTATGTGCAGAGAGATACTTCTA
ACCCTTGATGATAAAGAGTAGTTTGACCTTTGTTTCACAAGAGTCTAAAC
CATCCTAAAAGGAACATATTGATGGCAAATTAACACTTGGATTCTTGTTT
GTTCGTCTCCATTTATGCAAGGCCTAATGTTTGTGACTACAGTGTCTGGG
ATATAGTTAACAGGTGGCACAGTTGTATGTACCTAAAACAATGTTTCCAG
AGCTCTTGTGAATATCCTGTGTACTTTCTTCTCACGGACTTTTTCTGGCT
TCCACAGGTTCACATTATGCGTGCCATCTTTGCTGGCTCTTACTGCTTGA
TGCCTCAAGCTATAGGTTCATACTTGAAAGATTTCAGCTGTGAGCAAGTT
GGGTCTCAGACTTCTGAAGGTCCCTTTCAGGTCCTTACAGCCCCTTATCC
ATCCCACACATTCACACTGTGGCTGTCTCCGACGCACCAGGAAGCCAGTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h03.b1 MSMg01no113_h03.b1 CHROMAT_FILE:
MSMg01no113_h03.b1 PHD_FILE: MSMg01no113_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:52 2005
         (244 letters)



>mm_chr15_92607035_92607678
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaaacttctttgctgttaccagaaagttttgatcttttgatgttatcatatgacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaaacttctttgctgttaccagaaagttttgatcttttgatgttatcatatgacccaa 385

                                                                       
Query: 61  ttaaaatatattttctgtgttcctatgttcagatttatatatgaagtgggtgagatctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaaaatatattttctgtgttcctatgttcagatttatatatgaagtgggtgagatctat 325

                                                                       
Query: 121 cactatcattttatggtcttctgagtaagtggattgcttcatgtttctgatggcatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactatcattttatggtcttctgagtaagtggattgcttcatgtttctgatggcatgagt 265

                                                                       
Query: 181 gcattaggcaatgttggcattatgtccagttgggcatgaagcatagtctcttggtgtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcattaggcaatgttggcattatgtccagttgggcatgaagcatagtctcttggtgtttc 205

               
Query: 241 tttg 244
           ||||
Sbjct: 204 tttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no113_h03.g1 MSMg01no113_h03.g1 CHROMAT_FILE:
MSMg01no113_h03.g1 PHD_FILE: MSMg01no113_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:52 2005
         (564 letters)



>mm_chr15_92469327_92470290
          Length = 964

 Score = 1044 bits (540), Expect = 0.0
 Identities = 558/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaatggtttagtaactggaatcaatatatgtctattacttctgtgtctttaattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaatggtttagtaactggaatcaatatatgtctattacttctgtgtctttaattgtt 260

                                                                       
Query: 61  tttatctggaatacttgatagcgagcctgaaaatggcacggagaaacacattcttcactg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tttatctggaatacttgatagcgagcctgaaaatggcacagagaaacacattcttcactg 320

                                                                       
Query: 121 ttttaagtggcactgcgggggagttctcaagagaacacttatgtgcagagagatacttct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ttttaagtggcactgtgggggagttctcaagagaacacttatgtgcagagagacacttct 380

                                                                       
Query: 181 aacccttgatgataaagagtagtttgacctttgtttcacaagagtctaaaccatcctaaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccttgatgataaagagcagtttgacctttgtttcacaagagtctaaaccatcctaaa 440

                                                                       
Query: 241 aggaacatattgatggcaaattaacacttggattcttgtttgttcgtctccatttatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaacatattgatggcaaattaacacttggattcttgtttgttcgtctccatttatgca 500

                                                                       
Query: 301 aggcctaatgtttgtgactacagtgtctgggatatagttaacaggtggcacagttgtatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aggcctaatgtttgtgactacagtgtctgggatatagttaacaggtgacacagttgtatg 560

                                                                       
Query: 361 tacctaaaacaatgtttccagagctcttgtgaatatcctgtgtactttcttctcacggac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacctaaaacaatgcttccagagctcttgtgaatatcctgtgtactttcttctcacggac 620

                                                                       
Query: 421 tttttctggcttccacaggttcacattatgcgtgccatctttgctggctcttactgcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttctggcttccacaggttcacattatgcgtgccatctttgctggctcttactgcttg 680

                                                                       
Query: 481 atgcctcaagctataggttcatacttgaaagatttcagctgtgagcaagttgggtctcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcctcaagctataggttcatacttgaaagatttcagctgtgagcaagttgggtctcag 740

                                   
Query: 541 acttctgaaggtccctttcaggtc 564
           ||||||||||||||||||||||||
Sbjct: 741 acttctgaaggtccctttcaggtc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)