BAC Information

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BAC

Clone NameMSMg01-113K22
Chromosome15 (Build37)
Map Location 43,857,672 - 43,857,968
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K22.T7 (MSMg01no113_k22.b1)MSMg01-113K22.TJ (MSMg01no113_k22.g1)
ACCAG325756AG325757
length712711
length of high quality
(start - end)
121 (104 - 224)296 (60 - 355)
definitionCHROMAT_FILE: MSMg01no113_k22.b1 PHD_FILE: MSMg01no113_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:11 2005CHROMAT_FILE: MSMg01no113_k22.g1 PHD_FILE: MSMg01no113_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCCCACCTGCGCGGAANNCAGT
GGTTTCAACAGAAGCTNGTTTGNGAAATAGTGGAAGAATATTGGTATCGG
ATAGAAGAAGAGAGCACGCAAAAGAGTTAGGGGCTTTGTGATAGCTACAG
GGCAAGATGTAGCTACTAGTGTCTTCTGACCCCACTGGCTAATTTGCCAG
GATTTGCTACTGGAGTATTTATAATTCATACGGCTTAAAAGATTATTATT
CTAGCTGTTGTGCCCAGCGATTGATTGTGGTGTTTTCCTTCATGGGAAGG
CTCCACTGGTTTCTCATTAAACGGCACAGCACGAAAGACTTAAGTAAACT
AATCAATCTGCCCGCACAGATTCTGGAGCTCAGAGTCAGAGAGTCTCCAT
GAGATACCAACTATTTGGTGAGATGGCCAGGGCTGACAGTAGTTGTGAGA
AGCATGGGAACTTGGGGTTCTTTTTAATATTTCTCACAAAAGGTATATTC
TTTTACTTTAGGATGAAATGCCCTACACCTCTGTCAAAACCCTTTGGTCC
ACAACTTTTGTTACCTTAACTGTGGTTCTGCCCACTTACTGTTTCTCCTA
TCTTTTCCATTGCTGATATTGTTGTTGTTCGACGCCCCCCACCAAAATCG
TTGACATCTTCCAAGCGCGCCACTGACGTCCTATCGACTTTCCTTTATCG
CATGTATGTGCC
GAAGTGGTAGGCTGGCGGCGCCTGGTCCCAACATTAGGTGACCTATAGAA
GTTCCCCGAAATTCTCACCTGAGGAAACCGAATGGCTGAGAAGCACCTGA
AAAAATGTTCACCATCCTTAATCATCAGAGAAATGGAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATGCAGG
TGACAGCAGATGCTGGCGAGGACGTGGAGAGTCTTTATTAATTTCAGTCA
GATTCAGATTGTAAACCTTCCCACTGTGCAGGACAGGAGTGCGGGGTTTT
GGCATTTTTATATGAGCATAATCAGGGATTTTTCTTTTAATTTTTAGTTT
TGGGAGACATGCCCAGGTGACAGGGGATGTCATCTTTTAAACCCAATATT
GTCTCGCCTAACTCATGTGACTGATTCGGGCGACTGTAAGGCGGAACTCT
TCTGTCCTGGGAAGTAACTTCATGGTGTCGTCAGGAACTAGTGTGTCTTT
ATACCTAACCACAGCTGTCTGTGGACCTTTGATTACCCTCCTCTCATGTC
TCAAATGTAATGACCCCTATCTCTTCGAGGATAACTTCGCTCTTCCCAAG
GACACACCTCCAGCTGCCTTGGGAATTGTTTAGACACCCATCCCCGACAG
TGTCTCCTCAGGGGAGTGCCCCTACGAAATTGTGGATAACATCACTTCTT
GTTTCCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k22.g1 MSMg01no113_k22.g1 CHROMAT_FILE:
MSMg01no113_k22.g1 PHD_FILE: MSMg01no113_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:11 2005
         (296 letters)



>mm_chr15_43857473_43858168
          Length = 696

 Score =  491 bits (254), Expect = e-143
 Identities = 287/298 (96%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctcacctgaggaa-accgaatggctgagaagcacctgaaaaaatgttcaccatcct 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 200 aattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcaacgtcct 259

                                                                       
Query: 60  taatcatcagagaaatggaaatcaaaacaaccctgagattccacctcacaccagtcagaa 119
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaa 319

                                                                       
Query: 120 tggctaagataaaaaa-tgcaggtgacagcagatgctggcgaggacgtggagagtcttta 178
           |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggctaagatcaaaaact-caggtgacagcagatgctggcgaggacgtggagagtcttta 378

                                                                       
Query: 179 ttaatttcagtcagattcagattgtaaaccttcccactgtgcaggacaggagtgcggggt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 ttaatttcagtcagattcagattgtaaaccttcccactgtgcaggacaggagtgcagggt 438

                                                                     
Query: 239 tttggcatttttatatgagcataatcagggatttttcttttaatttttagttttggga 296
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 tttggcatttttatacgagcataatcagggatttttcttttaacttttagttttggga 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)