BAC Information

Click to search

BAC

Clone NameMSMg01-113M24
Chromosome15 (Build37)
Map Location 18,513,280 - 18,513,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875, LOC621884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113M24.T7 (MSMg01no113_m24.b1)MSMg01-113M24.TJ (MSMg01no113_m24.g1)
ACCAG325853AG325854
length701704
length of high quality
(start - end)
429 (43 - 471)332 (68 - 399)
definitionCHROMAT_FILE: MSMg01no113_m24.b1 PHD_FILE: MSMg01no113_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:21 2005CHROMAT_FILE: MSMg01no113_m24.g1 PHD_FILE: MSMg01no113_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
AGATTTATTCCCTTGGTTTCGTGAGCAATTATATCCCTAATGGAATTGCT
TTTGAATTTGCTACTTTTATTATTTTCTAGATTTATACTTTCTTCTTTTT
GATTGAAACCAAAAGTTTCCCTAGTTTATTCTGCTCATTCCTACCTTATC
CTCATCTTTCCCAGGTCCTTCTCTGCTTTGCACACATCCAATTTCACTCC
TTTTGAATCTCTCTTTAAAAATAACTAGCCAATTGTCTTCAATTGATAAC
TTCTCACAAACAAACAAACAAATGACCCACAGACACATAAACAGAAAAAC
CTAGTAGTATCCAGTAGAGTTCATTAGTATATAAACTAAAACAGCTCATG
TCCAGCAAGCAGATGAAGCAAGTAGTCAAATCAAAACCAGGCCTCTTGTC
TAGGAGTAGATGGGAACATGGGCAACAGAGACAAACTCAATGGCATTTTT
GGTCCTATAGGCCACCTTTCCCCCTGCCCTTTGTGTATTCGGACAGATGC
TCTGCACATAGATGATACTTTCTGAAGGTGGGGATTCATGAACATCTGGG
TGTGGAGACAGGTATGTTTCTGCATCTATACATGTTTCGTGAGGTTCTTC
TTTGGCACATTTTCATGGCTGCTTGCAAAGTTTTCCATCGCGAATAATTC
G
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAAGAACACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGTTGCCAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCAGAAGATACCCCAACTGGTAAGAAGGACACG
TGCTCCACGTACGTTCATAGAAGGCTTATTTATAATAGCCAGAAGCTGGG
GGGAATCTAGATGCCCCTCAATAGAGGAATGCATACTGGAAAATGAGACA
CGTCTACTCAATGGAGGACTACTCAGGTATTAAACATAATGAATTTATGA
TATTCCTAGCCAATTGCATGGACCTGGGGGGCATCTTCCTGAGTGAGGTA
ACACATTCACAAAAAAACTCTGACAGGGTGTACTCGCTAAAAAAAGGGTA
TTAACCGCGGGCTAGGGTACCCAGGATATAAGATGTAACTTGCTAAGCAC
CCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_m24.b1 MSMg01no113_m24.b1 CHROMAT_FILE:
MSMg01no113_m24.b1 PHD_FILE: MSMg01no113_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:21 2005
         (429 letters)



>mm_chr15_18513077_18513906
          Length = 830

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/427 (98%), Gaps = 1/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaatt-agatttattcccttggtttcgtgagcaattatatccctaatggaattgcttttg 62
           ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagatttattcgcttggtttcgtaagcaattatatccctaatggaattgcttttg 263

                                                                       
Query: 63  aatttgctacttttattattttctagatttatactttcttctttttgattgaaaccaaaa 122
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 aatttgctacttttattattttctagatttatacttttttctttttgattgaaaccaaaa 323

                                                                       
Query: 123 gtttccctagtttattctgctcattcctaccttatcctcatctttcccaggtccttctct 182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttccctagtttattctgctcattcctaccttatcctcatctttcccaggtccttctct 383

                                                                       
Query: 183 gctttgcacacatccaatttcactccttttgaatctctctttaaaaataactagccaatt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctttgcacacatccaatttcactccttttgaatctctctttaaaaataactagccaatt 443

                                                                       
Query: 243 gtcttcaattgataacttctcacaaacaaacaaacaaatgacccacagacacataaacag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcttcaattgataacttctcacaaacaaacaaacaaatgacccacagacacataaacag 503

                                                                       
Query: 303 aaaaacctagtagtatccagtagagttcattagtatataaactaaaacagctcatgtcca 362
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaacctagtagtgtccagtagagttcattagtatataaactaaaacagctcatgtcca 563

                                                                       
Query: 363 gcaagcagatgaagcaagtagtcaaatcaaaaccaggcctcttgtctaggagtagatggg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 564 gcaagcagatgaagcaagtagtcaaatcaaaaccaggcctcttgtctagcagtaaatggg 623

                  
Query: 423 aacatgg 429
           |||||||
Sbjct: 624 aacatgg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)