BAC Information

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BAC

Clone NameMSMg01-114E05
Chromosome15 (Build37)
Map Location 95,433,033 - 95,433,391
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem117, LOC100043315, Nell2
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E05.T7 (MSMg01no114_e05.b1)MSMg01-114E05.TJ (MSMg01no114_e05.g1)
ACCAG326187AG326188
length703761
length of high quality
(start - end)
359 (63 - 421)195 (76 - 270)
definitionCHROMAT_FILE: MSMg01no114_e05.b1 PHD_FILE: MSMg01no114_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005CHROMAT_FILE: MSMg01no114_e05.g1 PHD_FILE: MSMg01no114_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCGAAGAGGATCCGCGGAAT
TCAGATACCACCTCAAGCTGTTTCAAATACACGGAAAGCCTATTTTACTT
AGATGTCTTCTTCCTTCTATAGGCACCGTTAGTTCTCCCCACAAAACATT
TTCCCTCATACTCCTTTGCATATTCGCTTAACAGAGTGTCCTCTGGGCTT
GTTTGAGCTTCCATGTGACCATGTGATCTTGTTTGATCAATACAGTAGGT
ATAGCTGCACTCAATTTTCCTTTGACGAAAAATATCTGGATAACCGGAAA
ATATGTGTGTCCTTCATATACCATGATTAGCCTAGATGCTTGACTCCAAG
TCACACATTGACCCCCGGGTTTATCACTTCAATCCAGAATATCAGGTTCT
TACAGGACAACGTATTTTATGTATAGAAGTCTCAGTGTCCCCACTGTTGA
CAGAAGGCAGCTTTCATAATCGATCATATAGGCCAGCCTACCATATTTGA
TTTGACTCACATCAAGGTGAAACCTCCTGAATGTGTAACTAGACGTGTTT
CAATTCATTGTCTGTAGTCCCAGCTGCCTCTTTCCCAGCGCAAATTTTGA
CCAACGATGAATTTGCACAACATGAGATACCAATGCGTTCTACAACAGCG
GTCCATCTCTGCCCGAAATTACCTACTGATTTCAACGTGCTGAGCCTTAC
AAG
TATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATAACTGTGGCTTCATGGAATGA
TTTAGGTAGTGTTCCTTCTGTTTATATTTTGTGGAATAGTTTGAAGAGTA
TTGGTATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACCAT
CTGGTCCTAGGCTTTGTTTGGTTGGGAGACTTTTAATGACTGCTTCTATT
TCTTTAGGGATCATGGGACTGTTTAGATGGCTTTTCTGGTCCTTATTTAA
CTTTGGTATTTGGCATCTGTTTAGAAAATTGTCCATTTCATCCAGATTTT
CCAGTTCTGCTGAATATAGGCTTTTGTAGCACGATCTGACGCCTTTCAAA
AATTTCCTCAGTTCCTGTTGCCACATCTCCTTTTCTTCCTGATTTTGTTA
ATTTAGCACATTTTCCTTGTGCCCTCTGGTTAGCCTGGCTCAAGGCTTAT
CTATCTTGTCGACTTTTTCAAACATTCTTCTCCCAGTTTTGCTTGATCCT
TTGTATACCCCCTTTTTGTTTCTATTTTGTCGATTTCAGCCTCTGAGTTT
GAATTATTCCCCGCTCGTTTACTCCTCTTTGTTTCGCCCTTGCCTTTCTT
TTTAGTCCTCCAGTTTTTCCTGGCGTTGTTTGTTCCCGCCTTTTATTTGT
TTTCCCTCTCCCCCGCCTTTTCTTCCTCGGAAATTTTTTTTTAACCCCAT
TTATCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e05.b1 MSMg01no114_e05.b1 CHROMAT_FILE:
MSMg01no114_e05.b1 PHD_FILE: MSMg01no114_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:55 2005
         (359 letters)



>mm_chr15_95432833_95433591
          Length = 759

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagctgtttcaaatacacggaaagcctattttacttagatgtcttcttccttctatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagctgtttcaaatacacggaaagcctattttacttagatgtcttcttccttctatag 260

                                                                       
Query: 61  gcaccgttagttctccccacaaaacattttccctcatactcctttgcatattcgcttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaccgttagttctccccacaaaacattttccctcatactcctttgcatattcgcttaac 320

                                                                       
Query: 121 agagtgtcctctgggcttgtttgagcttccatgtgaccatgtgatcttgtttgatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgtcctctgggcttgtttgagcttccatgtgaccatgtgatcttgtttgatcaata 380

                                                                       
Query: 181 cagtaggtatagctgcactcaattttcctttgacgaaaaatatctggataaccggaaaat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 cagtaggtatagctgcactcaattttccttttacgaaaaatatctggataaccggaaaat 440

                                                                       
Query: 241 atgtgtgtccttcatataccatgattagcctagatgcttgactccaagtcacacattgac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgtgtccttcgtataccatgattagcctagatgcttgactccaagtcacacattgac 500

                                                                      
Query: 301 ccccgggtttatcacttcaatccagaatatcaggttcttacaggacaacgtattttatg 359
           | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgggtttatcacttcaatccagaatatcaggttcttacaggacaacgtattttatg 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)