Query= MSMg01no115_a08.b1 MSMg01no115_a08.b1 CHROMAT_FILE:
MSMg01no115_a08.b1 PHD_FILE: MSMg01no115_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:51 2005
(414 letters)
>mm_chr15_11301281_11302094
Length = 814
Score = 735 bits (380), Expect = 0.0
Identities = 395/400 (98%)
Strand = Plus / Minus
Query: 5 gaattcagttagaaaggttacatcaacgagatgtccttgggatggcaaagggaggaggct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattcagttagaaagattacatcaacgagatgtccttgggatggcaaagggaggaggct 530
Query: 65 gggcaaagctcaggctcttctgaaatgcttttcaaatggtggacatttaaactgccattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gggcaaagctcaggctcttctgaaatgcttttcaaatggtggacatttaaactgccattt 470
Query: 125 ctaaatcacttaatattcttgttcaaattataggctaatccttgacatgaaaaattaata 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 469 ctaaatcacttaatattcttgttcaaattataggctgatccttgacatgaaaaattaata 410
Query: 185 tttgggacagaactctgaaaattatttttagcaaggtccttacacgatttattccactta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttgggacagaactctgaaaattatttttagcaaggtccttacacgatttattccactta 350
Query: 245 tagaagcagaaaaacaaaacagttacttcacatgggaaatatagacactgtgactcacaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 349 tagaagcagaaaaacaaaacagttacttcacatgggaaatatagacactgtggctcacaa 290
Query: 305 aattctacagtgagacatctttcttttttgagttcacttgacacttgagtttcatatgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aattctacagtgagacatctttcttttttgagttcacttgacacttgagtttcatatgcc 230
Query: 365 taacattttctagtggtcattaatgttctttttttttttt 404
|| ||||| |||||||||||||||||||||||||||||||
Sbjct: 229 tatcatttcctagtggtcattaatgttctttttttttttt 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_a08.g1 MSMg01no115_a08.g1 CHROMAT_FILE:
MSMg01no115_a08.g1 PHD_FILE: MSMg01no115_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:51 2005
(500 letters)
>mm_chr15_11197498_11198395
Length = 898
Score = 891 bits (461), Expect = 0.0
Identities = 494/513 (96%), Gaps = 15/513 (2%)
Strand = Plus / Plus
Query: 1 tctcactaaggataatatttatttttgtgacagcttgaattaatgtctcatgattaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tctcactaaggataatatttatttttgtgacagcttgaattaatgtctcatgattaaaat 247
Query: 61 ggcactctgtgttgatccatacagaagatttttactaacaatattgatcatgccatagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggcactctgtgttgatccatacagaagatttttactaacaatattgatcatgccatagcc 307
Query: 121 ttttgcag-------------tggtaatcactctctgcaagaagtcaatgcttcagtgct 167
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttttgcagtggtagtgttcaatggtaatcactctctgcaagaagtcaatgcttcagtgct 367
Query: 168 cacaatcacactggcctctcacacaggccactctgtgaagactaaactcagtactttgag 227
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 368 cacaatcacactggcctctcacacagcccactctgtgaagactaaactcagtactttgag 427
Query: 228 ttgggaataaagtctatatctgaatggttcaagtccagggctttgtgaaggagaatcccc 287
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgggaataaggtctatatctgaatggttcaagtccagggctttgtgaaggagaatcccc 487
Query: 288 aagcctgaattctctttgcatcttattgagcttatactccttcccaccctctactggcag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagcctgaattctctttgcatcttattgagcttatactccttcccaccctctactggcag 547
Query: 348 tagctgatcagtagctggcacgacctgaatgtccctaggaagattgctcctgaggacact 407
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tagctgatcagtagctggcaggacctgaatgtccctaggaagattgctcctgaggacact 607
Query: 408 gtacagccacagccttagaagtgtaaaaaaaagaagcgacttctgtagctaagacacaac 467
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct: 608 gtacagccacagccttagaagtataaaaaaa-gaag-gacttctgtagctaagacacaac 665
Query: 468 cagagtatcattgaatgaaggttcacagttaca 500
|||||||||||||||||||||||||||||||||
Sbjct: 666 cagagtatcattgaatgaaggttcacagttaca 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 898
Length adjustment: 10
Effective length of query: 490
Effective length of database: 888
Effective search space: 435120
Effective search space used: 435120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
