BAC Information

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BAC

Clone NameMSMg01-115D16
Chromosome15 (Build37)
Map Location 60,665,912 - 60,732,075
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik
Downstream geneA1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D16.T7 (MSMg01no115_d16.b1)MSMg01-115D16.TJ (MSMg01no115_d16.g1)
ACCAG326912AG326913
length818721
length of high quality
(start - end)		165 (46 - 210)383 (79 - 461)
definitionCHROMAT_FILE: MSMg01no115_d16.b1 PHD_FILE: MSMg01no115_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:07 2005CHROMAT_FILE: MSMg01no115_d16.g1 PHD_FILE: MSMg01no115_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,665,912 - 60,666,069)(60,731,693 - 60,732,075)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTCATACAATTACACTGATTTTTATGTACTGATCTCTTTTT
GCAAACTGAGGTGTTCAATGGAACAAGGAGAAACTTACCAGTGAAAATGT
AATTCAAGGTGGAAAATATAGGAGAGGTAAGGGAAAGAGAGAAGGGAAGA
AGGAGAGCGCCCTTACGAGAGATCCCACCGTTCCCGGATTTCTTGCGCTC
CCGTTGATTGGCTCACCCCATCTTATTATTCACGCCCCCACGCTACTTGA
CACCCTCTTCCGTTATACCCCTTTTTTTTTTCGCCCTGTGCATACCTCCC
CACCACCAGAATTTTTTTTTTTTTCCCCCCCCCCCCCCAGGAGTGCTTTT
GTTTCCACGTTACTCCTTTGTCCGCCACCCCCACTAAAACAAAACACCTC
TCTTTTTTGTTCCCCCCGCCCCCCCCACCTCCCTTCCTCTCCGTATGCAC
GAACCCTCCCACACTTTTTTTCTTCTTGCCCTCCGCCATTGTTTTCATCT
TCCCATTGTTTCCCCTCGCTCTAACCTCCCCTACCCCCCGCCCTTTATGT
TCCCTCCCGCACCCCAACCCTCTTTATACGTCCCGTTCTTTTTTCCTCTA
TTTTATTCCTCCACTCCTTTTCATCCGCTACCTCTCCCCATTATCCCCCT
TCTCCCTTCCGCCCTTTTTCTCTCTTTTTTTTCCCTCTTTCTTTCCCCCT
TTATCTATAAACTTCCCAATTAACTTCACTTTCAAGTCCCACTTTTCACT
TTATCTCAATCTTCCCCC

TTTTAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAGATGAGCATCAAACCC
ACCTGCTGCATGTAGCTTTCGACACTCATATCCTTATGGATGCTAGAACG
TCAGACTGAGACAGTTTATATGTAGGGCAGGAGTTGTGTGGGGGCATTTG
AAAATAGTAAGGCTATAAAGTAATTGTGTTGCTGAAGAATATAGGCTATC
GGAGCAACATACACTCTGCATGAGCTCAGATTCCCAAAGACTCTTTCCAC
AAATGAACATTTTATCAGCTGGATAGTTGAGCATTTATAATTGGATGGTG
AATTATGTGACATTTCAAGTAACAGATTTCATTTCTTTTATTTTTTAGCT
TATCTTCCCATCCCCTCCACCCGCATCACTTATTTTTTCTGCGAATCCCC
AGGAATACTACAAGGAGCCACGTGTCCACTCATGTCCAATGGCATCAATA
TAATAAAGGTTAAACACACTGGGATATGTGAGCTGCTTTGCAAAATATCC
TTATTGGCTTCCTCGCTTTGACATCCAGATGACTTATTCCTGCTCACTTT
CCCATTTCTCCTTCCTCTCTACACTACCCCCATTCTTACCGACAACTACC
TGTTCAACTTGTCCTGTTTGCCCTCGTTTCGCCCCCCTCCCTTTTCTCCT
CCCCCTTCCTTCTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d16.b1 MSMg01no115_d16.b1 CHROMAT_FILE:
MSMg01no115_d16.b1 PHD_FILE: MSMg01no115_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:07 2005
         (165 letters)



>mm_chr15_60665708_60666272
          Length = 565

 Score =  290 bits (150), Expect = 3e-83
 Identities = 156/158 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttcatacaattacactgatttttatgtactgatctctttttgcaaactga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttcagacaattacactgatttttatgtactgatctctttttgcaaactga 264

                                                                       
Query: 65  ggtgttcaatggaacaaggagaaacttaccagtgaaaatgtaattcaaggtggaaaatat 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgttcaatagaacaaggagaaacttaccagtgaaaatgtaattcaaggtggaaaatat 324

                                                 
Query: 125 aggagaggtaagggaaagagagaagggaagaaggagag 162
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagaggtaagggaaagagagaagggaagaaggagag 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no115_d16.g1 MSMg01no115_d16.g1 CHROMAT_FILE:
MSMg01no115_d16.g1 PHD_FILE: MSMg01no115_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:07 2005
         (383 letters)



>mm_chr15_60731493_60732275
          Length = 783

 Score =  702 bits (363), Expect = 0.0
 Identities = 378/383 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaagatgagcatcaaacccacctgctgcatgtagctttcgacactcatatccttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cataaagatgagcatcaaacccacctgctgcatgtagctttcgacactcatatccttatg 524

                                                                       
Query: 61  gatgctagaacgtcagactgagacagtttatatgtagggcaggagttgtgtgggggcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gatgctagaacgtcagactgagacagtttatatgtagggcaggagttgtgtgggggcatt 464

                                                                       
Query: 121 tgaaaatagtaaggctataaagtaattgtgttgctgaagaatataggctatcggagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgaaaatagtaaggctataaagtaattgtgttgctgaagaatataggctatcggagcaac 404

                                                                       
Query: 181 atacactctgcatgagctcagattcccaaagactctttccacaaatgaacattttatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atacactctgcatgagctcagattcccaaagactctttccacaaatgaacattttatcag 344

                                                                       
Query: 241 ctggatagttgagcatttataattggatggtgaattatgtgacatttcaagtaacagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctggatagttgagcatttataattggatggtgaattatgtgacatttcaagtaacagatt 284

                                                                       
Query: 301 tcatttcttttattttttagcttatcttcccatcccctccacccgcatcacttatttttt 360
           ||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||
Sbjct: 283 tcatttcttttattttttagcttatcttcccatcccctctaaatgcatcacttatttttt 224

                                  
Query: 361 ctgcgaatccccaggaatactac 383
           ||| |||||||||||||||||||
Sbjct: 223 ctgtgaatccccaggaatactac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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