BAC Information

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BAC

Clone NameMSMg01-116B10
Chromosome15 (Build37)
Map Location 88,905,600 - 89,024,069
singlet/doubletdoublet
Overlap geneTrabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2
Downstream geneSaps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116B10.T7 (MSMg01no116_b10.b1)MSMg01-116B10.TJ (MSMg01no116_b10.g1)
ACCAG327556AG327557
length715709
length of high quality
(start - end)
413 (79 - 491)232 (70 - 301)
definitionCHROMAT_FILE: MSMg01no116_b10.b1 PHD_FILE: MSMg01no116_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:14 2005CHROMAT_FILE: MSMg01no116_b10.g1 PHD_FILE: MSMg01no116_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,023,657 - 89,024,069)(88,905,600 - 88,905,831)
sequence
TTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTCTTTATGCATAAGCTGGCTTTGAACTTGTAGCAGT
GTTCTTCCATCTACCTTTCACATGCTGGGCATGCAGGTGTACATGATCTC
GCCTGGCTTGAAGGTAATCTTAAAGGCTATGGACTTGGACTCCTGAGCCT
TTGCTGGACAGCGGGTGTTGGACTGCAGCTTGTTGAGTATTAGAGACCCA
CAGTCACGCCTGAAATGTCCCACGGTAGTGCCATGAGTCTTTCCCAATCT
CTGACTGTATGGAGAAGCCCAGCAGTAATTCTGTGGGGTGGGTCACGCAT
GTCACCCTCATCATGTTTGCCTCCTGACTTTCCTCCTCACCCTAGACATC
TCAGGGTCCTATAGCCTTCCAAAGAGCTGTTGGCCCTGCACTCATTCTCA
GCTCAGCCTGACTGAGTTGTAGGAAACCCAGGATTGATTGTGGTGTGGGC
ATATGGAAGAAAGACAGTCCACCTCCAGGAGATTCACCCAGGCTCAGCTA
CGTAAGGATGGGAAGCAGGCAGTGAGACTGAAGACATTTCTGTTTCAGGT
GACCCTTCCCTATTGAAGGCAAAAAGTGGCTCATTGATGCATTCATTCAT
CAACCTATCAAGTTCTGATCATCCTCCACCATATAGGTCCTGCTGTGTCT
ATGCTCCGCTCACGA
TTTTACGATGCAGTGGTAGGCTGGCGGCGCCTGTTCACAAATGGAGGTGA
CCTATAGAAGTTCCGCGAAATTCTCTTCCTCAAAGAGGCCGACTTCCAGG
AGGGCCATTCACAAGAACAATGTCAAGGCAGGGTCTCCAAAAATCAGGGC
CAGAGTTGTAACCCTTTGGAACCTGAAAGGGCTGGATGGGGCAGCTGGGA
ACTAGGCACAGATTACTTCCCCTTTGGAGGGTCTGTGCCAGGGCCTGCTC
CGGGTCGTCACTGCCTGGCTCTCACAGGAGCCTATCTTGGGGTCCTCAAA
TGGAGACGTGTCCATTATGGGTTCACCCGGCTCCTCTCATCCACTCATCA
ACCCTGATTTTGTGTACCCGCCTCCCCGACACCTGTCCTGAGTGTTCCAA
GTCGGCCTCTCCCCCTGCCCTACCCTTTAAAGCGCCCTAGGAGACTGGTG
AGCCTGAATCCCGTCCTAAGATGCTGTACACTTGTCGTCACTGGGGACCT
TCCCATCCTGAGTACTTCGCAGTCTTCGGTCTCTCTATCCCATCTAGCTG
AATACCTATTCAAATTTTGATGTTCCCGGCTTTGACTGTGTTAATTCTAG
CCCTTTTTTTTCTGCCTCTTGAACCCCTTCGATTGTTTTCTATTTCCCTT
GCTATTTTCTTTGTTTTTTCATATGATCTTTATTTTTTGTTCTTTTCCAT
TTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_b10.b1 MSMg01no116_b10.b1 CHROMAT_FILE:
MSMg01no116_b10.b1 PHD_FILE: MSMg01no116_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:14 2005
         (413 letters)



>mm_chr15_89023457_89024269
          Length = 813

 Score =  721 bits (373), Expect = 0.0
 Identities = 403/413 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggctttgaacttgtagcagtgttcttccatctacctttcacatgctgggcatgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 613 ctggctttgaacttgtagcagtgttcttccatctacctttcacattctgggcatgcaggc 554

                                                                       
Query: 61  gtacatgatctcgcctggcttgaaggtaatcttaaaggctatggacttggactcctgagc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtacatgatcacgcctggcttgaaggtaatcttaaaggctatggacttggactcctgagc 494

                                                                       
Query: 121 ctttgctggacagcgggtgttggactgcagcttgttgagtattagagacccacagtcacg 180
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctttgctggacagtgggtgttgtactgcagcttgttgagtattagagacccacagtcacg 434

                                                                       
Query: 181 cctgaaatgtcccacggtagtgccatgagtctttcccaatctctgactgtatggagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctgaaatgtcccacggtagtgccatgagtctttcccaatctctgactgtatggagaagc 374

                                                                       
Query: 241 ccagcagtaattctgtggggtgggtcacgcatgtcaccctcatcatgtttgcctcctgac 300
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccagcagtaagtctgtggggtgagtcacgcatgtcaccctcatcatgtttgcctcctgac 314

                                                                       
Query: 301 tttcctcctcaccctagacatctcagggtcctatagccttccaaagagctgttggccctg 360
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 313 tttcctcctcaccctagacatctcagggtcctacagccttccaaagagctattggccctg 254

                                                                
Query: 361 cactcattctcagctcagcctgactgagttgtaggaaacccaggattgattgt 413
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 253 cactcattctcagctcagcctgactaagttgtaggaaacccaggattgattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no116_b10.g1 MSMg01no116_b10.g1 CHROMAT_FILE:
MSMg01no116_b10.g1 PHD_FILE: MSMg01no116_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:14 2005
         (232 letters)



>mm_chr15_88905400_88906031
          Length = 632

 Score =  387 bits (200), Expect = e-112
 Identities = 224/232 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcttcctcaaagaggccgacttccaggagggccattcacaagaacaatgtcaaggc 60
           |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 201 attctcttcctcaaagtggccgacttccaggagggccattcacaggtacaatgtcaaggc 260

                                                                       
Query: 61  agggtctccaaaaatcagggccagagttgtaaccctttggaacctgaaagggctggatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtctccaaaaatcagggccagagttgtaaccctttggaacctgaaagggctggatgg 320

                                                                       
Query: 121 ggcagctgggaactaggcacagattacttcccctttggagggtctgtgccagggcctgct 180
           ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct: 321 ggcagctgggaactaggcagagattacttcccctttggagggcccgtgccagggcctgct 380

                                                               
Query: 181 ccgggtcgtcactgcctggctctcacaggagcctatcttggggtcctcaaat 232
           || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ccaggtcgtcactgcctggctctcacaggagcctatcttggggtactcaaat 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)