BAC Information

Click to search

BAC

Clone NameMSMg01-116C15
Chromosome15 (Build37)
Map Location 15,679,538 - 15,679,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183, LOC100040119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C15.T7 (MSMg01no116_c15.b1)MSMg01-116C15.TJ (MSMg01no116_c15.g1)
ACCAG327613AG327614
length710708
length of high quality
(start - end)
323 (54 - 376)400 (81 - 480)
definitionCHROMAT_FILE: MSMg01no116_c15.b1 PHD_FILE: MSMg01no116_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:20 2005CHROMAT_FILE: MSMg01no116_c15.g1 PHD_FILE: MSMg01no116_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGGCACCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGATTGCCTGGCGTGGCGACTGTAGCAACATTTTTA
AATTGAGTAATTTTGGATTTGGTAAGTTTAGAAAGGGAACATGAATTATA
AATTTTTCAGTATCTGATGTCTTTAACGTAATAGATATGCATGTAGACAC
AAAGATATTGGCAACAGGGAAACGAAAACTGGCTGAAATGTAACCACCTT
AAATCAGGGACCACCCTAGATTATATGAAACTATGAACATTCATGAAGAA
TTAAAAAGAAAAACAAAACACAATGAAACAAAACAAAATCAAAAGTAAAG
AAAAAGTGTTTTTGCTAAATTTTAAGGGGACCACAGCTGCCTGTTGATAA
ACTGATTTCATTCTTAAGCCAAAAGAACCTCAGATAAATATGTTTCAATA
TTTAACCCACTCCAGTTTGGGGCACTTTGTTTAAGAGCCTTTGGAAATTA
CCTTATATGCTATGTATGGATCATTTATGAATAATATTTGAGTTAGTTAA
TCGTTTCATGTATGTTTGACATTTGCAAATCTTTTACTATGGAATTGCTT
TTGACTTTATCTCAAGACTTGCAATAACCACAAACACTGGATATATTTTC
TTTAATCCGTTTTCCTCCTGATCAACAATTACCCCCAAGTCTCATACACG
GTTACACTCC
CCCCCTCTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGAGCTCC
ATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCAACCTTCTTGAGTTCT
TTATATATATTGGATAACAGTACCCTATCTGGTTTAGGATAGGAAAAGAT
ACTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCACAAGCTGTGCAATTTTATGAGGTCCCATTTGTCGATTCTCAAT
CTTACAGCACACGCCATTGCTGTTCTACTTCAGGACATTTCCCCCTGTAC
CTATCATCTTCGGGGCTTTTCCCTACTTTCCCCTCTATAAGTATCGAAAT
TACAAAGTATCCTTTATAAAACTTACTTGCAAAAAATTTATTTTCAATAG
AACTTGCACTATAATAAGTATTCTATAGTAAAAGCCTGCCCAAAATAAGT
GAACTTCAATGTATTTATCTAAGTCTGGTCAGAGAGTTGAGTAATACTTG
AAAATCCAATCATGTTTTTTTTTTGGTTCTTTGTTTGTTTGTTTGCTTAG
CGTTTTTACACNTCCTTCTGGATTCCAGTAGGATATATATAATTATATAA
TTATCTCATATTCAAAATGATCATTTAAGAAAATCTTTATTGGGCACTAT
CACATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c15.b1 MSMg01no116_c15.b1 CHROMAT_FILE:
MSMg01no116_c15.b1 PHD_FILE: MSMg01no116_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:20 2005
         (323 letters)



>mm_chr15_15679334_15680056
          Length = 723

 Score =  563 bits (291), Expect = e-165
 Identities = 312/319 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgattgcctggcgtggcgactgtagcaacatttttaaattgagtaattttgga 64
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaatgtctggcgtggcgactgtagcaacatttttaaattgagtaattttgga 264

                                                                       
Query: 65  tttggtaagtttagaaagggaacatgaattataaatttttcagtatctgatgtctttaac 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 tttggtaagtttagaaagggaacatgaattataaatttttcagtatctgatgtctttagc 324

                                                                       
Query: 125 gtaatagatatgcatgtagacacaaagatattggcaacagggaaacgaaaactggctgaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gtaatagatatgcatgtagacacaaagatattggcaacagggaaacgaaaactgactgaa 384

                                                                       
Query: 185 atgtaaccaccttaaatcagggaccaccctagattatatgaaactatgaacattcatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 atgtaaccaccttaaatcagggaccaccctagattatatgaaactataaacattcatgaa 444

                                                                       
Query: 245 gaattaaaaagaaaaacaaaacacaatgaaacaaaacaaaatcaaaagtaaagaaaaagt 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gaattaaaaagaaaaacaaaacacaataaaacaaaacaaaatcaaaagtaaagaaaaagt 504

                              
Query: 305 gtttttgctaaattttaag 323
           |||||||| ||||||||||
Sbjct: 505 gtttttgcaaaattttaag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)