Query= MSMg01no116_j06.b1 MSMg01no116_j06.b1 CHROMAT_FILE:
MSMg01no116_j06.b1 PHD_FILE: MSMg01no116_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(241 letters)
>mm_chr15_57296813_57297452
Length = 640
Score = 404 bits (209), Expect = e-117
Identities = 230/237 (97%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 1 aacacagactaatttctagtagacaaaattgcaactcgctgagactcgcattttctttcc 60
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 201 aacacagactaatttctagtagacaaaattgcaactcactgagact-gcattttttttcc 259
Query: 61 tctgattcacaactaacagtcctgaaactaagatttaagaacctcaccgaagctgcacag 120
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 260 tctgattcacagctaacagtcctgaaactaagatttaagaacctcactgaagctgcacag 319
Query: 121 ctggcctatatgaacatgaataataattccatacacctgctgggcttttaccatatgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ctggcctatatgaacatgaataataattccatacacctgctgggcttttaccatatgcta 379
Query: 181 tatattttgctgagcatttttgtgccttgtttcacccctttaattctttgaacttag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatattttgctgagcatttttgtgccttgtttcacccctttaattctttgaacttag 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space: 146392
Effective search space used: 146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no116_j06.g1 MSMg01no116_j06.g1 CHROMAT_FILE:
MSMg01no116_j06.g1 PHD_FILE: MSMg01no116_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(292 letters)
>mm_chr15_57428189_57428880
Length = 692
Score = 501 bits (259), Expect = e-146
Identities = 280/287 (97%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 3 atatgctttattcttgtcaaggaatgaatgagcttacctctgcttggcctgggggagggg 62
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 363 atatgctttattcttgtaaaggaatgaatgagcttacctctgcttgggttgggggagtgg 304
Query: 63 taggatggaaaactttgaaaagtctccctgtgtcttgagtactctttcaactgatggctg 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taggatgtaaaactttgaaaagtctccctgtgtcttgagtactctttcaactgatggctg 244
Query: 123 gtaaattctttttccatcactttgatggtgagaggtacccaggactccgcagagcaaatt 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtaaattctttttacatcactttgatggtgagaggtacccaggactccgcagagcaaatt 184
Query: 183 ggtcagcttcttgagttgttcccactgttggcttggaagtcagctttcatcaggtctgtt 242
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 183 ggtcagcttcttgagttgttcccactgttggcttggaagtcagctttc-tcaggtctgtt 125
Query: 243 aaatgagttcttactggcttacatgttttccagatctctagattttt 289
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaatgagttcttactggcttacatgttttccagatctctagattttt 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
