Query= MSMg01no116_p03.b1 MSMg01no116_p03.b1 CHROMAT_FILE:
MSMg01no116_p03.b1 PHD_FILE: MSMg01no116_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:20 2005
(272 letters)
>mm_chr15_50784296_50784963
Length = 668
Score = 453 bits (234), Expect = e-132
Identities = 258/268 (96%), Gaps = 4/268 (1%)
Strand = Plus / Minus
Query: 5 gaattctcaagtgtatctatgagaagatttggagggaggtaagggaattgcagaaatgat 64
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattcttaagtgtatatatgagaagatttggagggaggtaagggaattgcagaaatgat 409
Query: 65 gtaaatataatatcaaaaataaagaaatagctaagaaataatgtaaaaatgaagcccctc 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtaaatataatctcaaaaataaagaaatagctaagaaataatgtaaaaatgaagcccctc 349
Query: 125 cattatatcaatggttatacattcacaaaaagtgaagaaaaaaaaaccaaaaagaacaag 184
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 cattatatcaatggttacacattcacaaaaagtgaagaaaaaaa----aaaaagaacaag 293
Query: 185 tgaagtggtcctcattcgtttctctgaacagttttgtctggataggacaagcttgagtag 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 292 tgaagtggtcctcattcgtttctctcaacagttttgtctggataggacaagcttgagtag 233
Query: 245 ccacattgtaagtgtgaacagggctgag 272
|||| |||||||||||||||||||||||
Sbjct: 232 ccacgttgtaagtgtgaacagggctgag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 668
Length adjustment: 9
Effective length of query: 263
Effective length of database: 659
Effective search space: 173317
Effective search space used: 173317
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no116_p03.g1 MSMg01no116_p03.g1 CHROMAT_FILE:
MSMg01no116_p03.g1 PHD_FILE: MSMg01no116_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:20 2005
(517 letters)
>mm_chr15_50674408_50675327
Length = 920
Score = 978 bits (506), Expect = 0.0
Identities = 516/520 (99%), Gaps = 3/520 (0%)
Strand = Plus / Plus
Query: 1 ctcagtgcaaa-caagacagtggtctttccagggtgatttgtttccacctggccttggtt 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagtgcaaaacaagacagtggtctttccagggtgatttgtttccacctggccttggtt 260
Query: 60 ctttatctacagggcaagttgttggggatatcatttacatggatgctatctgtgtcaggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttatctacagggcaagttgttggggatatcatttacatggatgctatctgtgtcaggt 320
Query: 120 attatctgtgctactgaactttcacatgttgcttatgtatatatgaaaatccaagaaact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatctgtgctactgaactttcacatgttgcttatgtatatatgaaaatccaagaaact 380
Query: 180 gtttaaattactccatcttccaaactagctatcttatatttgcagtcaagttggttcaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttaaattactccatcttccaaactagctatcttatatttgcagtcaagttggttcaat 440
Query: 240 taatttaatgaaccatccatgtcaaaccaaactaaagatcaaaggaacagagtcctctga 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatttaaagaaccatccatgtcaaaccaaactaaagatcaaaggaacagagtcctctga 500
Query: 300 ggtctttcctctgctccttttttttggggggggg--tgggtgtaacatgcaataaattta 357
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ggtctttcctctgctccttttttttgggggggggggtgggtgtaacatgcaataaattta 560
Query: 358 tcattacctgactgctctgaatgctccctaaaaacagtttaattgaaaaagattaatgaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattacctgactgctctgaatgctccctaaaaacagtttaattgaaaaagattaatgaa 620
Query: 418 tggttcatccatttctgcaattgacttaactaatgtagttcagtaaatgattcctgaaat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggttcatccatttctgcaattgacttaactaatgtagttcagtaaatgattcctgaaat 680
Query: 478 tgttcataatactggcatctaaaatcacattttatcacta 517
||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttcataatactggcatctaaaatcacattttatcacta 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space: 461370
Effective search space used: 461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
