BAC Information

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BAC

Clone NameMSMg01-117C14
Chromosome15 (Build37)
Map Location 81,406,920 - 81,574,967
singlet/doubletdoublet
Overlap geneEp300, L3mbtl2, Rangap1
Upstream geneGrap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080
Downstream geneZc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117C14.T7 (MSMg01no117_c14.b1)MSMg01-117C14.TJ (MSMg01no117_c14.g1)
ACCAG328363AG328364
length728728
length of high quality
(start - end)		541 (43 - 583)533 (72 - 604)
definitionCHROMAT_FILE: MSMg01no117_c14.b1 PHD_FILE: MSMg01no117_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:37 2005CHROMAT_FILE: MSMg01no117_c14.g1 PHD_FILE: MSMg01no117_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,406,920 - 81,407,457)(81,574,646 - 81,574,967)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGAGCGCGGAATT
CTACATATATACCCAACAATCATACCGCCATATCCAAAGCTGAGCTGCTC
TGAGGCACTCCTCATGAGAGGAAACACGTTGGGTCCACACTGTACCCAAT
AAAGCCATTATTCTATCAACTGTCACATGGTATCGTCCCTCATTTGTGAG
TTTTTGTCTCTCCAAATAATCAGCAGAGGAAGATGGAAAACATATATGAC
TTTTATTAACTTTGAATCTGGAGCCCAAGTTCCAAGTTCACAAATGTCCA
CTGAGCTACGCTAGATGTTTGTTTGGTTTTTCTGGATGAGGTTTCTCTGT
GTAGCTCTGGCTCTCTCAGAACCCAGTAGACATGGCTGACCTAGAATTCA
GATATCTACCTCTGCCTGTGAATTGATGGGATTAAAAGAAATGGACCAGC
ACTGCCCAGCTAGAACTAAGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTG
AAATTTTTTATCTCCAGGGTCATGTGCCCCATGGTCCTCCAGTGGCTACA
CACAAGATGCCTTGGGTTATAGCTCCTGCTGAGGACATTGTAGCTACCTT
AGATTCTGGGAAAGAAGCTCTTGCAAACGCTCTCTGCCCACCCTCCCTCC
CTCTCTGGAGGCTGGGATTAATATTGAGAGCCAATACCTTGTCTCATACC
AATCAATAGTAAAGAATGACCTATTCTG

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCATGAACCGGGAATTTATAGAGCAAGG
AGCAAGGCAGGGTCAGCAGACAGAAAACTTGAGGTATAATGTGATTGCTG
TTAGCTCCACCCAACAGGGTTCTTAAGTGTTTTTAAAGTCGGGTTTTTAT
TTTGTGTGTACCAGTGTTTTGGCTGTAGATATGCATGGGCATCATGTGTG
TCCCTAGTGCCTTGCAAAGGTTAGAAGAGGGGATAGGAGTTCCTGAAACT
AGAGTCACAGATGGTTGTGAGCACTGTGTGGGTGCTGGGAATGTAACATG
GGTCCTCTGGAAGAGCAGCAGGTGCTCTTAATGGCTGAGCCATCTCTTCA
AGATAGGTTAGGTACTGGAACATCACCTTGGGGTATAGTGGAAGAGGAGG
ATCCTGATGGTGTTCCCAGATGGAAGGTAGGGGAGTCTAGTTAAGCCATG
CTTGCTAAAAATTGGACAATTGGGCCAGGCTTGGTGAAGCACACCTTCAA
CACCAGCACTTGGAAGGCAGAGGCAGGCCTGGTCTACCTAGCCAGAGCAG
TCAGCTACATAGAGAGACACTTATCTCAAAGAAAATAATGATAATAAATT
TAATTAATTAACTTATTTATTTATTTATTTAGCTTCTGAGACAGGGTTTC
TCTATGCAGTCCTGGGTGCCCTGGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_c14.b1 MSMg01no117_c14.b1 CHROMAT_FILE:
MSMg01no117_c14.b1 PHD_FILE: MSMg01no117_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:37 2005
         (541 letters)



>mm_chr15_81406717_81407657
          Length = 941

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctacatatatacccaacaatcataccgccatatccaaagctgagctgctctgagg 63
           |||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 gaattctacatagatatccagcaatcataccgccatatccaaagctgagctcctctgagg 263

                                                                       
Query: 64  cactcctcatgagaggaaacacgttgggtccacactgtacccaataaagccattattcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactcctcatgagaggaaacacgttgggtccacactgtacccaataaagccattattcta 323

                                                                       
Query: 124 tcaactgtcacatggtatcgtccctcatttgtgagtttttgtctctccaaataatcagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaactgtcacatggtatcgtccctcatttgtgagtttttgtctctccaaataatcagca 383

                                                                       
Query: 184 gaggaagatggaaaacatatatgacttttattaactttgaatctggagcccaagttccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggaagatggaaaacatatatgacttttattaactttgaatctggagcccaagttccaa 443

                                                                       
Query: 244 gttcacaaatgtccactgagctacgctagatgtttgtttggtttttctggatgaggtttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttcacaaatgtccactgagctacgctagatgtttgtttggtttttctggatgaggtttc 503

                                                                       
Query: 304 tctgtgtagctctggctctctcagaacccagtagacatggctgacctagaattcagatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgtgtagctctggctctctcagaacccagtagacatggctgacctagaattcagatat 563

                                                                       
Query: 364 ctacctctgcctgtgaattgatgggattaaaagaaatggaccagcactgcccagctagaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctacctctgcctgtgaattgatgggattaaaagaaatggaccagcactgcccagctagaa 623

                                                                       
Query: 424 ctaagtttttgtttgtttgtttgtttgtttgtttgaaattttttatctccagggtcatgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctaagtttttgtttgtttgtttgtttgtttgtttgaaattttttatctccagggtcatgt 683

                                                                     
Query: 484 gccccatggtcctccagtggctacacacaagatgccttgggttatagctcctgctgag 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccccatggtcctccagtggctacacacaagatgccttgggttatagctcctgctgag 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no117_c14.g1 MSMg01no117_c14.g1 CHROMAT_FILE:
MSMg01no117_c14.g1 PHD_FILE: MSMg01no117_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:37 2005
         (533 letters)



>mm_chr15_81574646_81575578
          Length = 933

 Score =  623 bits (322), Expect = 0.0
 Identities = 322/322 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatgaaccgggaatttatagagcaaggagcaaggcagggtcagcagacagaaaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agcatgaaccgggaatttatagagcaaggagcaaggcagggtcagcagacagaaaacttg 263

                                                                       
Query: 61  aggtataatgtgattgctgttagctccacccaacagggttcttaagtgtttttaaagtcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aggtataatgtgattgctgttagctccacccaacagggttcttaagtgtttttaaagtcg 203

                                                                       
Query: 121 ggtttttattttgtgtgtaccagtgttttggctgtagatatgcatgggcatcatgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtttttattttgtgtgtaccagtgttttggctgtagatatgcatgggcatcatgtgtgt 143

                                                                       
Query: 181 ccctagtgccttgcaaaggttagaagaggggataggagttcctgaaactagagtcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ccctagtgccttgcaaaggttagaagaggggataggagttcctgaaactagagtcacaga 83

                                                                       
Query: 241 tggttgtgagcactgtgtgggtgctgggaatgtaacatgggtcctctggaagagcagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tggttgtgagcactgtgtgggtgctgggaatgtaacatgggtcctctggaagagcagcag 23

                                 
Query: 301 gtgctcttaatggctgagccat 322
           ||||||||||||||||||||||
Sbjct: 22  gtgctcttaatggctgagccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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