Query= MSMg01no117_l02.b1 MSMg01no117_l02.b1 CHROMAT_FILE:
MSMg01no117_l02.b1 PHD_FILE: MSMg01no117_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:19 2005
(247 letters)
>mm_chr15_64078265_64078916
Length = 652
Score = 371 bits (192), Expect = e-107
Identities = 236/252 (93%), Gaps = 5/252 (1%)
Strand = Plus / Plus
Query: 1 atagaaacaaagactg---ccccc-cccccc-gccacccctgtacctaaaaatctcaagg 55
|||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 201 atagaaacaaagactgctccccccaccccccagccacccctggacctaaaaatctcaagg 260
Query: 56 gactgacacagtgtaagtgatgacaggcatctgtgagcaaacgcattccacctgaaaaac 115
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 261 gactgacacagtgtaaatgatgacagccatctgtgagcaaacacattccacctaaaaaac 320
Query: 116 taccgtacagagagaaagagcaattatctatagaaatggctactactattctcaacgatg 175
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 321 taccgtagagaaagaaagagcaattatctatagaaatggctactactattctcacctatg 380
Query: 176 tgccagatttgaaaacacccattctttctcgtctacagcccactcagtgtgactgctcct 235
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgctagatttgaaaacacccattctttctcatctacagcccactcagtgtgactgctcct 440
Query: 236 gttactggtgaa 247
||||||||||||
Sbjct: 441 gttactggtgaa 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 652
Length adjustment: 9
Effective length of query: 238
Effective length of database: 643
Effective search space: 153034
Effective search space used: 153034
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no117_l02.g1 MSMg01no117_l02.g1 CHROMAT_FILE:
MSMg01no117_l02.g1 PHD_FILE: MSMg01no117_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:20 2005
(250 letters)
>mm_chr15_64145971_64146618
Length = 648
Score = 441 bits (228), Expect = e-128
Identities = 244/250 (97%), Gaps = 2/250 (0%)
Strand = Plus / Minus
Query: 1 agggtctctgggaacagacacacttattagctaagtctaggctctgaacaacagttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agggtctctgggaacagacacacttattagctaagtctaggctctgaacaacagttcatt 389
Query: 61 tttactgtttatgtcacacacatagaggagtgctgccagctcagtagacagggcaggtac 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttactgtttatgtcacacacacagaggagtgctgccagctcagtagacagggcaggtac 329
Query: 121 tagatgacaactggggggggggggcggtgggaccagactggctcacagccctgaggaaga 180
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 328 tagatgacaactggggtgtggggg--gtgggaccagactggctcacagccctgaggaaga 271
Query: 181 caaatcctttcagagggaagccccagtgctcactgatttttctcgatgatttgctctcag 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 270 caaatcctttcagagggaagccccagtgctcactgatttttctcgctgatttgctctcag 211
Query: 241 tactttatag 250
||||||||||
Sbjct: 210 tactttatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 648
Length adjustment: 9
Effective length of query: 241
Effective length of database: 639
Effective search space: 153999
Effective search space used: 153999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
