BAC Information

Click to search

BAC

Clone NameMSMg01-117M19
Chromosome15 (Build37)
Map Location 84,832,147 - 85,004,488
singlet/doubletdoublet
Overlap geneLOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2
Upstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik
Downstream geneFbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117M19.T7 (MSMg01no117_m19.b1)MSMg01-117M19.TJ (MSMg01no117_m19.g1)
ACCAG328835AG328836
length726723
length of high quality
(start - end)
166 (71 - 236)227 (83 - 309)
definitionCHROMAT_FILE: MSMg01no117_m19.b1 PHD_FILE: MSMg01no117_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:28 2005CHROMAT_FILE: MSMg01no117_m19.g1 PHD_FILE: MSMg01no117_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,832,147 - 84,832,312)(85,004,263 - 85,004,488)
sequence
TCAAAATTTGCGGCGCTATACGACTACTATTTCCAAGAAGCCGCGGAATT
CCGCCTCCTTGCAGACATCCTGGCCTGGGACGGGCCTTGTTTAGTCAGCC
TTGTCTGCGCAGTTACTCCCTGACATCTTCTAAGGGACAGTCACATTCAC
AGGCTGGAAGTAAGGCTGCATCACTCACCATCCCGGAATGATCCTCAGGG
GATACCTTTGAGGGCTGGAGCCTTTTGCAACAGTCTGGTATCTTAGGTGG
AGGAACCCTGCCTGAGAACTCTTACTTAATCATGCTCCCTTAGGGCTGAC
TAGTCCTTCTGAGCCCGTTAAAAAGAGGCATCTAGGCTTGCCCTGAAAAT
GACCTTGGTGTCCACCTTGCCCTTGCTTAGACTATTACCAGATGGTCCTG
GTCCTTCTGAGCCTCAGCTTGCTGGCATGGAAGGTTCATTCTAGAAACAG
GTCCTGTATATGGTAGTATTTACAAGGTTTCCTTTTAAATGTGGACACCT
ATAACACATAGTTTGGTATTACATTCCCGACATCCCTGAATCAAAGTTTC
TTCTCGAGCCTCGGACTTGAATGTGCTAAAACATTTCCACCCTGAAGACT
GCGAATGACCCATGAGCAGGTCCCTGTCTCACATGACCCCTTTGTATACT
TTGCCATTATCCGACTTGAACATGACAGGCATCAAACCGCCACATTCAGC
TCCTCCAATATTTGTATATCAAGTAT
CGATGCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTGACTACTATCCCCAGAGTTCT
GCTGAGATCTTCCGTAAGGCTTTCTTCTGTTGTTCTGATTGGACGATTTC
TATTTTTCTATATTTCTGTTTATAGAATCTGTTTCCTTTTGTGATTTACA
ATTACTTGCCGGGGCTCTATTTTTCTTTTCTTTTTCAGACATAATTGCCT
TCTGAACCGCTGATATCATCATGGTCTCCAGACCTCCTCCTGATAACCCA
CCATTCCCGCCGCCCTGTGTCTATATCTATCTCTTGTCCTTTTTCACGCC
GATCGCGATCTTTCTGGCCGCTGTTATGATGATGAGTGACTTTCCCGTTG
AAACCTGAACAGTTTCACATTTCATATGAGACTCTGGATCTTATTTAAGT
GACCCGTCATCGCTGTTTCTTTCTTTGACAGCATGAAAAGGGTAAAAGGC
CAGACTTCCTGCTCAGTTGTCCTTGATACACTTAGGTGATTAGAGTTCTG
CTCCTTGCAACTCTCGAGAGAAAAAGAAAGAACCTTTAGTCATCAAAATC
AATATCTGCCCAAATCTTTGGACCCTGAGTCATGTCCATACTCCCCACAA
AACTAACTGTATCAAATATTTGTTTCCCTGAAGGAACGAGAATAGTGCCT
TGCTATTTCAACCCGTCGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_m19.b1 MSMg01no117_m19.b1 CHROMAT_FILE:
MSMg01no117_m19.b1 PHD_FILE: MSMg01no117_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:28 2005
         (166 letters)



>mm_chr15_84831947_84832512
          Length = 566

 Score =  306 bits (158), Expect = 6e-88
 Identities = 164/166 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcctgggacgggccttgtttagtcagccttgtctgcgcagttactccctgacatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 tggcctgggacgggccttgtttagtcagccttgtctgcgcagttactcattgacatcttc 260

                                                                       
Query: 61  taagggacagtcacattcacaggctggaagtaaggctgcatcactcaccatcccggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagggacagtcacattcacaggctggaagtaaggctgcatcactcaccatcccggaatg 320

                                                         
Query: 121 atcctcaggggatacctttgagggctggagccttttgcaacagtct 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctcaggggatacctttgagggctggagccttttgcaacagtct 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no117_m19.g1 MSMg01no117_m19.g1 CHROMAT_FILE:
MSMg01no117_m19.g1 PHD_FILE: MSMg01no117_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:28 2005
         (227 letters)



>mm_chr15_85004062_85004688
          Length = 627

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   actatccccagagttctgctgagatcttccgtaaggctttcttctgttgttctgattgga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actatccccagagttctgctgagatcttccgtaaggctttcttctgttgttctgattgga 368

                                                                       
Query: 62  cgatttctatttttctatatttctgtttatagaatctgtttccttttgtgatttacaatt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgatttctatttttctatatttctgtttatagaatctgtttccttttgtgatttacaatt 308

                                                                       
Query: 122 acttgccggggctctatttttcttttctttttcagacataattgccttctgaaccgctga 181
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 307 acttgccggggctctatttttcttttctttttcagacgtaattgccttctgaaccgctga 248

                                                         
Query: 182 tatcatcatggtctccagacctcctcctgataacccaccattcccg 227
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatcatcatggtctccagacctcctcctgataacccaccattcccg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)