BAC Information

Click to search

BAC

Clone NameMSMg01-118A08
Chromosome15 (Build37)
Map Location 18,107,755 - 18,108,213
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835
Downstream geneLOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A08.T7 (MSMg01no118_a08.b1)MSMg01-118A08.TJ (MSMg01no118_a08.g1)
ACCAG329003AG329004
length717703
length of high quality
(start - end)
214 (71 - 284)459 (74 - 532)
definitionCHROMAT_FILE: MSMg01no118_a08.b1 PHD_FILE: MSMg01no118_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:44 2005CHROMAT_FILE: MSMg01no118_a08.g1 PHD_FILE: MSMg01no118_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATCACCTGACAAATGAATGGGTTTAAATATCTTTATATTTAATTGT
TTTAATATTGAATTAAAATTTTTTTCATCTGCATAACTGTTTTCTTCTCA
CCCTCTTTTTTACTGAATATTTTCTTTATAGACACTTCAAATGTTATCCC
CTTTCCCAGATTCTTCCACCCCCAAAACTTCCTATTCCATCTCCCCTCCC
CTTGCTTCTACGAGGGTGTTCCCCCACCCACTTAACCACCCACCCTCTCA
CCCATCCACTTCTGCCTCCCTGATCCTGGCATATCCCTACACTAGGTCAT
CATGCCTTTCTAGTTATCACGCCCTGCCCTCCCATTGATGCTCAACCAGG
CTATCCTCTGCTACATATACAGTTGGAGCCATCAGCCCCTCCTTGTGAAT
TCTTTGGTTGGTGGTTTACCCCCTGTTACCTCTGGCGTATCTGATTGGTT
GATATTTTTATTCTTCCCATGTGCAAGAAAACTTCTTTCTCTGTTTCAGG
CTTTTCCTTAAATCTTTCATTTGTCCTATTGCCCGGCCCCTTAAATCCTT
GTATCTATGATTCTTCCGCTCATGTTTTCCTTTCTGTAATCCCCGACATT
TACCCTAAGTACCTCCTTAAACTCTCTCTGAATTCTTCCATCTCCAATTT
TTTCACAATCACAACTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAATGCTGAAGGCTCTTAAAAATATA
ATATTAGATATTTATATGTCTTCTAGTTAAAATGTTTATATCTATGCATA
TTGTTTGTTAATCAGCTTATTTGTTTTGTTAATACTGAGTTTTGGTGTTA
GTTAAATGTTCTGTATATTAATGAACATTTTTATCTATTTTTATATTTTT
ATAGCTTGCCTCTGTACTCTGATGATTGTTTCCTATATCATTAAAAAGAT
TTAAGGTTTCAGGAATGTCAATATTTTTGGTCTTTGCCCATATTTTCTGG
TGCTTTAGCAGTCTTATCCCAAAATGTTTCTTATTTTGAGGTTTTGAAAT
ACTTTCTGGGTGTTTCACTCAAGTATTTTGACACTTTCCTTTTCAGTGTT
TAGTTTCTTTTTTTTAACTTTTTTATTCTATATTTTTATTATGTATTTTC
CTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACTCTCCCCCC
AACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCATTCCCCTGTA
CTGGGACATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATG
GCTTACTAGGCCATCTTTTGGAACATATGCACCTAGAGTCAAGATCTCCG
GGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a08.g1 MSMg01no118_a08.g1 CHROMAT_FILE:
MSMg01no118_a08.g1 PHD_FILE: MSMg01no118_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
         (459 letters)



>mm_chr15_18107555_18108412
          Length = 858

 Score =  828 bits (428), Expect = 0.0
 Identities = 452/460 (98%), Gaps = 2/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgctgaaggctcttaaaaatataatattagatatttatatgtcttctagttaaaat 60
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgatgaaggctcttaaagatataatattagatatttatatgtcttctagttaaaat 260

                                                                       
Query: 61  gtttatatctatgcatattgtttgttaatcagcttatttgttttgttaatactgagtttt 120
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 261 gtttatatctatgcatattgtttgttaatcagcttatttattt-gttaatactgagtttt 319

                                                                       
Query: 121 ggtgttagttaaatgttctgtatattaatgaacatttttatctatttttatatttttata 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ggtgttagttaaatgttctgtatattagtgaacatttttatctatttttatatttttata 379

                                                                       
Query: 181 gcttgcctctgtactctgatgattgtttcctatatcattaaaaagatttaaggtttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttgcctctgtactctgatgattgtttcctatatcattaaaaagatttaaggtttcagg 439

                                                                       
Query: 241 aatgtcaatatttttggtctttgcccatattttctggtgctttagcagtcttatcccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgtcaatatttttggtctttgcccatattttctggtgctttagcagtcttatcccaaa 499

                                                                       
Query: 301 atgtttcttattttgaggttttgaaatactttctgggtgtttcactcaagtattttgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgtttcttattttgaggttttgaaatactttctgggtgtttcactcaagtattttgaca 559

                                                                       
Query: 361 ctttccttttcagtgtttagtttctttttttt-aacttttttattctatatttttattat 419
           |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct: 560 ctttccttttcagtgtttagtttctttttttttaatttttttattttatatttttattat 619

                                                   
Query: 420 gtattttcctcaattacatttccaatgctatcccaaaagt 459
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtattttcctcaattacatttccaatgctatcccaaaagt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)