BAC Information

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BAC

Clone NameMSMg01-118J10
Chromosome15 (Build37)
Map Location 8,832,891 - 8,833,000
singlet/doubletsinglet
Overlap geneEG622770
Upstream geneWdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
Downstream geneLOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118J10.T7 (MSMg01no118_j10.b1)MSMg01-118J10.TJ (MSMg01no118_j10.g1)
ACCAG329422AG329423
length718715
length of high quality
(start - end)
221 (48 - 268)111 (134 - 244)
definitionCHROMAT_FILE: MSMg01no118_j10.b1 PHD_FILE: MSMg01no118_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:29 2005CHROMAT_FILE: MSMg01no118_j10.g1 PHD_FILE: MSMg01no118_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAATCCGCGG
AATTCCATGATCGTGTCCCCACTGTCGTACTTCTCGAGCTGTGAAATGAG
TTCCTTGGTCAGAAGCAATACTGTGTGGAATACCATGACGATAAATAAGG
CATTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGATGCATTACGTGCAGG
AAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAAC
GCTGTCCTTTCCATGAATGAAGTGGCCCAATGTAGTCAACCTGCTACCAG
GTTGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGTGT
TGGTTTCTGCTGCTGACAGATCTGGCAATCACCATTAGCTGTAATTGGAG
TTACTACCTGATTTAGTTCCCCCCAATCAACTGTCATTCTCCATGATCTA
CCTGTTTTCTGCATTGCCCCTATACGATATTTAAACGCACACGTGCCGTT
AATTACCACCCCTGCCTCTTTCTAGTCCCTGATAGCGCCATTACTTTTTG
CCCCCCCTCCTGTTATACGATATTGCCCCTTGACTCCTTATTTTCCTTTT
CCCCATTCTTTTTTTTAGCCCCCCCTCTGTCCTTTTTAACCCCCTTAGTC
CTTCCTCTTCTGTTCTCGCCTTTCTTTCCCACCATTCCTGCCTATCTTCC
CATTATTTCCCTTCTTCC
TCATTGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTGTAGCCCAAACCTGCACTT
CACAACCAGCACTGGCGAGGAGCGGGAAGGTCAGGCATTGTCTCATGATC
TAGATCACTTTCCTTCCTCACGAGAACCGTTTCTTGACTTGCTTCAGGAA
AATAAGATCATATGTAAACCTTGAGCACACAGCTCCGAACCCAGTGGATC
TCCAGAGGGGCTAGGACATCTACCCCGGATGAAAAGGGCACACAATCACG
CCGAGGGTTACTTGATCACTGACTGACCTTCCTGGATATTAGAGCAAGGC
GTGAAATTGATGACTCTTGTGACTGCCCTCGGTTTTGCTAAAATTACTTA
AGTACTGATTCCATTCATTCCCACAGCGCACATCGTGATCGCTATCATAT
GCTTGCAGGGTCCAATCACAACATACACAGTCCCTGCAGGCCAGACACGC
CCATCACCTCTGGACAGTTGCTTCTCTCATTATGCTACTATGCCGTAACC
CTACCACCAGCCTAACCTTTTCTATTTTAGGCCCCCGCCCCCTAGCCTTT
TCCTATGCCCCAGCCAACCCACCACATACGAACTCCTACCCGAATTCTTA
TGTTTTTAAAGGTTCTGAACTGTGTTCGCAACATCACTGTCATCCTTCAC
TCTGCTTCCTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_j10.g1 MSMg01no118_j10.g1 CHROMAT_FILE:
MSMg01no118_j10.g1 PHD_FILE: MSMg01no118_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:29 2005
         (111 letters)



>mm_chr15_8832691_8833200
          Length = 510

 Score =  192 bits (99), Expect = 8e-54
 Identities = 108/111 (97%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcattgtctcatgatctagatcactttccttcctcacgagaaccgtttcttgacttgct 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 310 ggcattgtctcatgatctagatcactttccttcctcaagagaaccgtttcttgacttgct 251

                                                              
Query: 61  tcaggaaaataagatcatatgtaaaccttgagcacacagctccgaacccag 111
           ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 250 tcagg-aaataagatcatatgtaaaccttgagcagacagctccgaacccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 510
Length adjustment: 8
Effective length of query: 103
Effective length of database: 502
Effective search space:    51706
Effective search space used:    51706
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)