Query= MSMg01no119_j05.b1 MSMg01no119_j05.b1 CHROMAT_FILE:
MSMg01no119_j05.b1 PHD_FILE: MSMg01no119_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:46 2005
(510 letters)
>mm_chr15_21275391_21276301
Length = 911
Score = 930 bits (481), Expect = 0.0
Identities = 501/511 (98%), Gaps = 7/511 (1%)
Strand = Plus / Minus
Query: 4 gaattctctttcttac----tcaaggtctcagactagaaaagacaatgcccttttctatc 59
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattctctttc---cagaatcaaggtctcagactagaaaagacaatgcccttttctatc 655
Query: 60 atcttcatctttggcatctccctgagtttatatttggaattttcaaattagttctttgtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atcttcatctttggcatctccctgagtttatatttggaattttcaaattagttctttgtc 595
Query: 120 actatgctgatatgatatgactttaagggggagacgtgaacaaagcaaagtttatcttgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actatgctgatatgatatgactttaagggggagacgtgaacaaagcaaagtttatcttgc 535
Query: 180 tacctgatattatacaacccatacagttatccctacatattagtgctacaagaataccaa 239
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 534 tacctgatattatacatcccatatagttatccctacatattagtgctacaagaataccaa 475
Query: 240 ccatcaaaaggtggtgtctctcttgtatttcagtgatttaaagaagaaaatgaagatcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccatcaaaaggtggtgtctctcttgtatttcagtgatttaaagaagaaaatgaagatcaa 415
Query: 300 gggtcaaaggctagccacttttatattgtatgtatgaagcaagtttatgctactcaagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gggtcaaaggctagccacttttatattgtatgtatgaagcaagtttatgctactcaagag 355
Query: 360 aatgtcttataaaacaaagacaaacacaaaaacattttactggaaatgaaaccattgagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aatgtcttataaaacaaagacaaacacaaaaacattttactggaaatgaaaccattgagt 295
Query: 420 aatgctcttagttcaaattgtttgacaattaaatgtttatgtatgaatatcaagtcatct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatgctcttagttcaaattgtttgacaattaaatgtttatgtatgaatatcaagtcatct 235
Query: 480 tgagtgtactcacacacacacatacacacat 510
||||||||||| |||||||||||||||||||
Sbjct: 234 tgagtgtactcgcacacacacatacacacat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_j05.g1 MSMg01no119_j05.g1 CHROMAT_FILE:
MSMg01no119_j05.g1 PHD_FILE: MSMg01no119_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:46 2005
(516 letters)
>mm_chr15_21094419_21095334
Length = 916
Score = 764 bits (395), Expect = 0.0
Identities = 476/521 (91%), Gaps = 33/521 (6%)
Strand = Plus / Plus
Query: 1 cagacaaacacaggatactagggagagagccacaaattaagtttgtactgaatatgtaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacaaacacaggatactagggagagagccacaaattaagtttgtactgaatatgtaga 260
Query: 61 tggcagtacatagaaacatagtcttggggtaattggcagactattagaaaaataaaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagtacatagaaacatagtcttggggtaattggcagactattagaaaaataaaaacc 320
Query: 121 agacacaaatagcatgacttgtgcacttaaggtaagaaatttaagttaggagagaagaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agacacaaatagcatgacttgtgcacttaaggtaagaaatttaagttaggagagaaaaaa 380
Query: 181 ggacagatgaacagatgtcctggaatagtagcctggttattctgatcactgctgcctgat 240
|| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 381 agagagatgaacagacgtcctggaatggtagcctgtttattctgatcactgctgcctgat 440
Query: 241 gggctctatttacattttctaaaaatgtcagttttgatgatacctatggctataatcatc 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctctatttaaattttctaaaaatgtcagttttgatgatacctatggctataatcatt 500
Query: 301 atcgtcatcgtcat---caacaccaccaccaccaccaccactgtctttcttgacatagca 357
||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcgtcatcatcattaccaccaccaccaccaccaccaccactgtctttcttgacatagca 560
Query: 358 aatcagggtgattccaatttgaaattattttt--gagtgtactttgtgtgtgtgtgtgtg 415
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aatcagggtgattccaatttgaaattatttttatgagtgtactttgtgtgtgtgtgtgtg 620
Query: 416 tatgtgcatgtatgcactcatatatatatatatatatacatacctatatgtatatatgtt 475
||||||||||||||||||||||||||| |||| ||
Sbjct: 621 ------catgtatgcactcatatatatatatat----------------gtat----gt- 653
Query: 476 tatgtatgtatatagcagggatacatgcatatttgcatgtt 516
||||||||||||||||||||| |||| |||||||||||||
Sbjct: 654 -atgtatgtatatagcagggatgcatgtatatttgcatgtt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
