BAC Information

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BAC

Clone NameMSMg01-120E11
Chromosome15 (Build37)
Map Location 24,434,057 - 24,434,559
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120E11.T7 (MSMg01no120_e11.b1)MSMg01-120E11.TJ (MSMg01no120_e11.g1)
ACCAG330685AG330686
length710735
length of high quality
(start - end)
519 (47 - 565)256 (75 - 330)
definitionCHROMAT_FILE: MSMg01no120_e11.b1 PHD_FILE: MSMg01no120_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:40 2005CHROMAT_FILE: MSMg01no120_e11.g1 PHD_FILE: MSMg01no120_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCCTTTCTGTTCAATGATTGCCTTTCCTTTCTGGTGGCTTTT
GGAATTTAGTAGATATGCTTGCACCTGAAATCCAGAAACAATAGGGTAAC
TTCATATAAATTATGAAATAAGTTGTTACATTTATACCTGGCCATTTGAA
AATATGTCATATTTTCACCAAAATATCATCTCTTTCTTTAGCTATTGTAG
CTAGTATGGTACAAACCTGTGGGTAGGAGTTCTTGATAGGGTGGTTGTCA
TGTGCAGTATTATTTGTTATTAAATTAGTTTACTTCATACAAAAGTTATC
TAGGCCTTTGAGGCAGGAGTAGGTGGGCCGGTGGGGGTGCACCCTCATAG
AGGAGGGGATACAGGGCTTGTGGAGGGACAACTGGGAAGCGGGATAATAT
TTGAAATGTAAATAAATAAAATAACCAATTAAAATGAGAAAAAAAACCCC
AAAAGTTACCAAAAGTAAATTTTGTTAGCTTATTCTGTGGATGAATTATT
TTATAAAAATACTTTGTTTTAAAGTTAAATTTAAAAACTTTTTTTTTTTA
CAAAGCTATGCTAACTTCTGTCACTGTTAAATTTGTTAATCTTCTACTGA
GAAATAAAGTCCTCCCTTATGTTCCCTCTGTGGGTCTCCTCTCATTAGGG
ACTTTAACCG
TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCAAATCAATAGAACTTGATA
ATATTATCCTGAGTGAGGTAACCCAGAACAAAAAGGACATGAATGGTTTG
TACTCATTTATAAGTAGAAATTAGCCATAAAATGCAGGATTCCATAAACC
CAAAGAAACTAAACAAGAAGAAAGGCCCACATAAATTGCTTTATTCTCAC
TTAGAAGGGAGAATAAAATATGATTATAGGAGGCAGGTGGAGAGAGGGAG
CTGGATGGGAGAGGAGATGGTGAGGAGAATGCCCTCCCCTCTTTCTTTCC
CTTTCTTTTTTCACCTCCCCCTCCCCCTTTCACTTTCCTCACTTGTATTT
CGTCTCTCTTTCTCTCACTTTTCTATTCCCTTTCCATGTACTGACTACCT
CACTTATTAATTAATTTTGCACCCTCTCATTATACAATTTCCTACCTCCA
CCCTTTCTCCCGCCCCTTTTAACATTTTTATTCGCATACCTATTATTGTC
ATACCTAATTCCCCCCCCTTTTTATTTTAATCTCCCTACAGACACCACCA
ATAACCGCCCGCGCTACATAATCCCCTACCCTTCATCCTCCTGTCCTTTC
CCCCTTTTCTCTTTCCCCGTTACTTTTCCCATCCCCACATGATACCTACA
TTTCTTTCTCACATACTCTTCTCGCCCCGTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_e11.b1 MSMg01no120_e11.b1 CHROMAT_FILE:
MSMg01no120_e11.b1 PHD_FILE: MSMg01no120_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:40 2005
         (519 letters)



>mm_chr15_24434057_24434975
          Length = 919

 Score =  897 bits (464), Expect = 0.0
 Identities = 494/504 (98%), Gaps = 1/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcctttctgttcaatgattgcctttcctttctggtggcttttggaatttagt 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattccttccctcctgttcaatgattgcctttcctttctggtggcttttggaatttagt 444

                                                                       
Query: 65  agatatgcttgcacctgaaatccagaaacaatagggtaacttcatataaattatgaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agatatgcttgcacctgaaatccagaaacaatagggtaacttcatataaattatgaaata 384

                                                                       
Query: 125 agttgttacatttatacctggccatttgaaaatatgtcatattttcaccaaaatatcatc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 agttgttacatttatacctggccatttgaaaatatgtcatactttcaccaaaatatcatc 324

                                                                       
Query: 185 tctttctttagctattgtagctagtatggtacaaacctgtgggtaggagttcttgatagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctttctttagctattgtagctagtatggtacaaacctgtgggtaggagttcttgatagg 264

                                                                       
Query: 245 gtggttgtcatgtgcagtattatttgttattaaattagtttacttcatacaaaagttatc 304
           |||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||
Sbjct: 263 gtggttttcatgtgcagtattatttgtcagcaaattagtttacttcatacaaaagttatc 204

                                                                       
Query: 305 taggcctttgaggcaggagtaggtgggccggtgggggtgcaccctcatagaggaggggat 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taggcctttgaggcaggagtgggtgggccggtgggggtgcaccctcatagaggaggggat 144

                                                                       
Query: 365 acagggcttgtggagggacaactgggaagcgggataatatttgaaatgtaaataaataaa 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 143 acagggcttgtggagggacaactgggaagcaggataatatttgaaatgtaaataaataaa 84

                                                                       
Query: 425 ataaccaattaaaatgagaaaaaaaaccccaaaagttaccaaaagtaaattttgttagct 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 83  ataaccaattaaaatgagaaaaaaa-ccccaaaagttaccaaaagtaaattttgttagct 25

                                   
Query: 485 tattctgtggatgaattattttat 508
           ||||||||||||||||||||||||
Sbjct: 24  tattctgtggatgaattattttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)