BAC Information

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BAC

Clone NameMSMg01-120H02
Chromosome15 (Build37)
Map Location 36,799,255 - 36,799,734
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H02.T7 (MSMg01no120_h02.b1)MSMg01-120H02.TJ (MSMg01no120_h02.g1)
ACCAG330810AG330811
length710760
length of high quality
(start - end)
445 (70 - 514)480 (134 - 613)
definitionCHROMAT_FILE: MSMg01no120_h02.b1 PHD_FILE: MSMg01no120_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:53 2005CHROMAT_FILE: MSMg01no120_h02.g1 PHD_FILE: MSMg01no120_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTGTACCTACAGGGTCAGGCTTTGCGGTCTGAGAAACTTAGT
TCTAGTTTTCTTCTTGTTGCTTGTAGATCCAGATGTAGAACTCTTAGCTC
CTTTCCAGCGCTATGTTGCCTGCATGTCACCATGCTTCCCTCCATGATGA
TAATGGACTAAACCTCTGAACCTGTAAGCCAGCTCAATTGTGTTCCTTTA
CAAGAATTGCCTTGGTCATGGTGTTTCTTTACAGCAATAGAAACCCTAAC
TAAGACAACATTTTGCCTTTCTGCTTCACTGTCTTCACTTGGATGAAGAC
AGTCACTGACCTGGCTAGTTTTATATCAGTCTGACACAAGCTAGAGTCAT
CTGAAAAGAGGGAACCTCAACTGAGAAAATGACTTCATGAGATCCAGCTG
TAGGACATTTTTTTTATTAGTAGGAGGTCCCAGACCATTGTGGGTGGTGT
CATCCCTAGGCTGGTGGTCCTAGATTCTGTAAGAGAGCAACATGATCATG
TCATGATGAGCAAACCAGTAGTCAACACACCTCAATGGCCTCTGCATCAT
CTCCTGCCTCCAGGTTCCTGCCCTGTGCGAGATCCTGTCCTGACCTCCTT
CAAGGATGGACTGCCCTGCGGAAGTGCATCCCAAATAAACCTTTTCACCC
CCAACGTGCT
AGAGAAAGAAGGGAAACAGAGGGAGAGAGAGGGGACGGCGGGGCCGGNGG
TGTGTTTTTTACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCTCTTCCATAGC
CTAGCCCTCAATTCCCCAAGAGCCCAAGAGAAATTCCACCTGCTAACTAA
CATGCTTATATAGTCTCAGCAGGAGAGAAGAAAGCTGCATGTCCCCTCTG
GTCATTCCTGTAATTAAAGCTGGGGACATTTGTTAGTTCCTGTGCAGGTG
GGGAGATGGCAAGGAAATAAGAGGGCAGTGAGTTAGTCACCTGCAGCCTG
AGCCAGGGTGCTCCTAATGTCTACAGCCTTTTCTCTGTCAAGGGCAGGGG
TGACATGGAGATTGGGGCTAGTCCCACTCACAGAATAAACTGTGGATGCT
CACAAGTGTGCAGAAGTTAACGGATGCTGTGTGGCTTGCCCTACTAGGAG
AATATGCCGTGCATCTTCTTACATGTTAGATCTCTTCTTGATTAAAGTGG
CCTTAAGCTACTTAGTCAGACCAGTTGCTTTGCTCCATCAACCCTCAGAA
AGCAGGCTTGTGAGACAATGGACACCAGCCCTGCTGTCACACTGGGATTA
CCCAATGAACGAGGGCATGGGTGACCCATCAGGTCCATGCTCATAAGCTG
CTCATCTGCATCCTGAAAAACTGAAAGGGAACGGTCAAACAGAGCGTTTC
ATTATGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h02.g1 MSMg01no120_h02.g1 CHROMAT_FILE:
MSMg01no120_h02.g1 PHD_FILE: MSMg01no120_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:53 2005
         (480 letters)



>mm_chr15_36799055_36799934
          Length = 880

 Score =  851 bits (440), Expect = 0.0
 Identities = 470/480 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttctcttccatagcctagccctcaattccccaagagcccaagagaaattccacctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttctcttccatagcctagccctcaattccccaagagcccaagagaaattccacctgc 260

                                                                       
Query: 61  taactaacatgcttatatagtctcagcaggagagaagaaagctgcatgtcccctctggtc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactaacatgctcatatagtctcagcaggagagaagaaagctgcatgtcccctctggtc 320

                                                                       
Query: 121 attcctgtaattaaagctggggacatttgttagttcctgtgcaggtggggagatggcaag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcctgtaattaaagctgggaacatttgttagttcctgtgcaggtggggagatggcaag 380

                                                                       
Query: 181 gaaataagagggcagtgagttagtcacctgcagcctgagccagggtgctcctaatgtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaataagagggcagtgagttagtcacctgcagcctgagccagggtgctcctaatgtcta 440

                                                                       
Query: 241 cagccttttctctgtcaagggcaggggtgacatggagattggggctagtcccactcacag 300
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 441 cagccttttctctgtcaagggcaggggtgacatggagactggggctagttccactcacag 500

                                                                       
Query: 301 aataaactgtggatgctcacaagtgtgcagaagttaacggatgctgtgtggcttgcccta 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaactgtggctgctcacaagtgtgcagaagttaacggatgctgtgtggcttgcccta 560

                                                                       
Query: 361 ctaggagaatatgccgtgcatcttcttacatgttagatctcttcttgattaaagtggcct 420
           ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ctaagagaatatgctgtgtatcttcttacatgttagatctcttcttgattaaagtagcct 620

                                                                       
Query: 421 taagctacttagtcagaccagttgctttgctccatcaaccctcagaaagcaggcttgtga 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagctacttagtcagaccagttgctttgctccatcaaccctcagaaagcaggcttgtga 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)