BAC Information

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BAC

Clone NameMSMg01-120L22
Chromosome15 (Build37)
Map Location 81,929,579 - 81,930,059
singlet/doubletsinglet
Overlap geneMei1
Upstream geneMkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik
Downstream geneCcdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L22.T7 (MSMg01no120_l22.b1)MSMg01-120L22.TJ (MSMg01no120_l22.g1)
ACCAG331036AG331037
length697810
length of high quality
(start - end)
490 (47 - 536)---
definitionCHROMAT_FILE: MSMg01no120_l22.b1 PHD_FILE: MSMg01no120_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:17 2005CHROMAT_FILE: MSMg01no120_l22.g1 PHD_FILE: MSMg01no120_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGC
GGAATTCTAATTTTCTTCTTAAAATTATTTATTTTATGCACAGGAGTACA
CTGTAGCTGTCTTCAGACACACCAAAAGAGGGCATCAGATCCCATTACGG
ATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGGCCTCTG
GGAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCCCTCCAGTCCAGGAA
TTCTAATTTCAATTCAACTCCTTTTCTACCGACATGCTCCGTAATGAAAA
CAAGCATAACGAGACGAGTATCCTTGACCCTCGCACACCCCTCTCCTGTG
AGACACACAGGAAAGAAGATACAGCCACGAGTACACAAGTCAGTCTACCT
CTCTTCCTGGTGCTTTGAGATCTGACAAGCACCCAGCGCCCAAGGGAACA
GATGAGAGGGGCTTCCTTTTGTTCTGACAAATGAGGGAATTGTCAGAGGC
CATGGTGATGTGGTTGCCAAGAGTTTGGGGCCACCTCTGCACAGGCATGG
TGGCCTTCTCTCTGCAAGTTACACCTGACAGGTATGCTGCTGTGAAACGT
GCTGCTGACATTGGCTAGCGCAATAAAAGAACGGATCCCGGTCATACGGG
AAGTAATGGGAATGCTTGGCTGGACTCCTGTCCGCCTCGGCATGGCN
AAATGAAAAACGAAGGAGAAGGGAACGGGAAAAGGGAAAGGTGCACGTGA
AATATAAAGAAAAATCANGGCACATGGAAGAACGGCAAAATGGGAAAGGG
AAGGGGACCAGTTCACGAATTGGGGGAGATTGTGATTTCCACGGGCATGA
ACTGCAAAAAATCTGAGCGTTTAAGGGATATGAAAAAAGGAAGTGGACAA
CGGACGTGAAAACGGAAAAGGTGTGGAATGGGAAATTGGGAAGGGGACAG
CCGCGTCCTGGGGCCGGGGTTAAAGATGAAGGCTTTTAAAAAGGGGATAT
GGGGGTAAGATGGAAACCGGTTTGTATAAGTATCAAGGCTAGTGTTGGGT
AGGGTTCTAGGCGCGGTGGAAAAAATAAAAAACAGCTCGGGGAAAAACAA
AAATCAGACTGGTGTGTTTTGGTCCTTGGAACCCCTCCTTTTCTTCTGTC
CCCCAATCTGCTTCCACACCCGTCCTACTGGGTGTGGGGGGGAACTTGGG
GGGCAAAAACATGACTAAACAATGAGGGGGGCATAAAATGGGGAATAAAT
CTGGGGGGCACCCCGCACAACAGTGGGGGGATCGTGGAAAAATGTGGGAA
ACAAAAGGGTGGGAATCATTGGGCAATCTGGGCAAAACCGTGTCACGGCA
CATCTTTTTAAATTTGCGGGGAAAAAAAGTGGCAAAAAGGGGGGACAAAA
AAGGTGAAAAAACACCAAGGGGGGCACAACGGGGGAAAAAACCCGGGGGA
ACCACACAAAGGGGGGGACACACACGGGGCACACAAACGGGGCTCCTAAA
TGTATACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l22.b1 MSMg01no120_l22.b1 CHROMAT_FILE:
MSMg01no120_l22.b1 PHD_FILE: MSMg01no120_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:17 2005
         (490 letters)



>mm_chr15_81929180_81930064
          Length = 885

 Score =  849 bits (439), Expect = 0.0
 Identities = 473/487 (97%), Gaps = 8/487 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctaattttc--ttcttaaaattatttattttatgcacaggagtacactgtagct 62
           |||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggaattctaa-tttcattttttaaaattatttattttatgcacaggagtacactgtagct 822

                                                                       
Query: 63  gtcttcagacacaccaaaagagggcatcagatcccattacggatggttgtgagccaccat 122
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gtcttcagacacaccagaagagggcatcagatcccattacggatggttgtgagccaccat 762

                                                                       
Query: 123 gtggttgctgggaattgaactcagggcctctgggagagcagtcagtgctcttaaccactg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gtggttgctgggaattgaactcagggcctctgggagagcagtcagtgctcttaaccactg 702

                                                                       
Query: 183 agccatccctccagtccaggaattctaatttcaattcaactccttttctaccgacatgct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agccatccctccagtccaggaattctaatttcaattcaactccttttctaccgacatgct 642

                                                                       
Query: 243 ccgtaatgaaaacaagcataacgagacgagtatccttgaccctcgcacacccctctcctg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccgtaatgaaaacaagcataacgagacgagtatccttgaccctcgcacacccctctcctg 582

                                                                       
Query: 303 tgagacacacaggaaagaagatacagccacgagtacacaagtcagtctacctctcttcct 362
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgagacacacag----gaagatacagccacgagtacacaagtcagtctacctctcttcct 526

                                                                       
Query: 363 ggtgctttgagatctgacaagcacccagcgcccaagggaacagatgagaggggcttcctt 422
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
Sbjct: 525 ggtgctttgagatctgacaagcacccagcgcccaagggaacaggtgaggggggtttcc-t 467

                                                                       
Query: 423 ttgttctgacaaatgagggaattgtcagaggccatggtgatgtggttgccaagagtttgg 482
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 466 ttgttctgacaaatgagggaattgtcagaggccacggtgatgtggttgccaagagtttgg 407

                  
Query: 483 ggccacc 489
           |||||||
Sbjct: 406 ggccacc 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 885
Length adjustment: 10
Effective length of query: 480
Effective length of database: 875
Effective search space:   420000
Effective search space used:   420000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)