BAC Information

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BAC

Clone NameMSMg01-120M24
Chromosome15 (Build37)
Map Location 68,392,831 - 68,571,700
singlet/doubletdoublet
Overlap geneEG665945
Upstream geneZfat1, LOC100041000
Downstream geneEG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120M24.T7 (MSMg01no120_m24.b1)MSMg01-120M24.TJ (MSMg01no120_m24.g1)
ACCAG331085AG331086
length755686
length of high quality
(start - end)
437 (124 - 560)241 (51 - 291)
definitionCHROMAT_FILE: MSMg01no120_m24.b1 PHD_FILE: MSMg01no120_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:23 2005CHROMAT_FILE: MSMg01no120_m24.g1 PHD_FILE: MSMg01no120_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,571,264 - 68,571,700)(68,392,831 - 68,393,071)
sequence
ACAAACAAGCTGTAATAATAATAATTGGGGAACAACCTGTCCGCGTCGAA
CATGATTCCTATAATTGCGGCGCTAATACGACTACTATTTCGAGAGAGAG
GGCGGAATTCTCAAAGATTACTAGAAACATCATTTCAAAAAAGAGCAACC
AAAGCTCTGGAGTTTGTTACCATTCCGTGTCATAACCGTGATGAAGCCAG
GTACAGATTCAGATCTGAAATCCACCTGAGTGCTGATTTCTCAGGCCCAC
TGACACGGCATCTTCTCTGGACTGACACTTAATTAATGTGGACTGAGAAG
TGAACAGCAATTAATCATTCAAAATGAATTGCTAATCACACCAGCCACAT
GATTGCAGGCCTGGTATTAGTGGAGAATTACTAGCAGCACTCATATAGAG
ATAAGAGTTATGAGTTAATTATTCATGGTGATTATGACTATTAAAACATA
GAGTTGAAGGGAAAAGTTCACTACTCCAAGCATGTCTCACTAGACCTAGA
GACAGAGATGGTCATCAGTACACTGGGGAAACACCCCAAGTTCCTCTTGA
AAACTTTCAACATTCATGAGCTTAAAGGTTCTGAGATTTTCAATAAAGAA
GTCTGCCCGTTTCTGTTTTGCTATTTGCTCATTACGCCATCTTTAACAGT
TTGTTAATGTTAGGCCAGGATGCCTCGCGGGCCAAAATTCTCATGTACCA
TATTCACCCCCTGTATAGCATCACTCTTGTGATCTTTGCACGAGTAAACT
GTTGT
GGCGGCCGCCTGGTTCACAAAGGGAGGGGACCTATAGAATGTTCCCCGAA
ATTCTCTACCTCCCTAACTCCTTTCCTCCTTCTGCCCTCACTGCCCCACC
TCCATCCACCCATTGCTCCAAGAGGGAGTGATTCAATTCAGAGGAATTTC
AAGAAGAAATGCCCACAGGATGGTGTTCAAGATGTTTGGAAATTCCACCT
GTTCCAAAACAAAATGCTGCATGTTCTACGTTTTCCCCCAGAGTCTGATG
GTGATAAAGAATGACCAATTAGTGTCAGAATCTCTAGACTGGTAGGTGAG
ATTTCCTTGCTACAATGATGTTCAGTGTAGATCTAGGTTAGTGTGTGTGT
GTGTGTGTGTCTGTGTGTGTGTGTGTGTGTCTGTGTGCGTGTCTGCTCCC
CAAAAACAAAACCAAAACACCACCACAAGGAAAACAAAGAAGGAAAAACC
AAGAAACAAACCCACAACCCCCCCCACACCCACCTAACACCCAAAAACCA
ACACAAATACACACCAACCAACCAATGACACAACCCCCCCGCACACAAAG
AAGAAAACCAAACAGCACCCCAACACACAACCCAAAATGATAAAAAACAC
AAAAACAAGAAACAAAAGAAACACAAAACAAGACAAAAAAGAAAAAAAAC
AAAACAAAAAACAGGACCAAAAAAAAACAAAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_m24.b1 MSMg01no120_m24.b1 CHROMAT_FILE:
MSMg01no120_m24.b1 PHD_FILE: MSMg01no120_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:23 2005
         (437 letters)



>mm_chr15_68571064_68571900
          Length = 837

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaacatcatttcaaaaaagagcaaccaaagctctggagtttgttaccattccgtgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 637 gaaacatcatttcaaaaaagagcaaccaaagctctggagtttgttaccattccatgtcat 578

                                                                       
Query: 61  aaccgtgatgaagccaggtacagattcagatctgaaatccacctgagtgctgatttctca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaccgtgatgaagccaggaacagattcagatctgaaatccacctgagtgctgatttctca 518

                                                                       
Query: 121 ggcccactgacacggcatcttctctggactgacacttaattaatgtggactgagaagtga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggcccactgacacgacatcttctctggactgacacttaattaatgtggactgagaagtga 458

                                                                       
Query: 181 acagcaattaatcattcaaaatgaattgctaatcacaccagccacatgattgcaggcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 acagcaattaatcattcaaaatgaattgctaatcacaccagccacatgattgcaggcctg 398

                                                                       
Query: 241 gtattagtggagaattactagcagcactcatatagagataagagttatgagttaattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtattagtggagaattactagcagcactcatatagagataagagttatgagttaattatt 338

                                                                       
Query: 301 catggtgattatgactattaaaacatagagttgaagggaaaagttcactactccaagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 catggtgattatgactattaaaacatagagttgaagggaaaagttcactactccaagcat 278

                                                                       
Query: 361 gtctcactagacctagagacagagatggtcatcagtacactggggaaacaccccaagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtctcactagacctagagacagagatggtcatcagtacactggggaaacaccccaagttc 218

                            
Query: 421 ctcttgaaaactttcaa 437
           |||||||||||||||||
Sbjct: 217 ctcttgaaaactttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_m24.g1 MSMg01no120_m24.g1 CHROMAT_FILE:
MSMg01no120_m24.g1 PHD_FILE: MSMg01no120_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:23 2005
         (241 letters)



>mm_chr15_68392631_68393271
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctacctccctaactcctttcctccttctgccctcactgccccacctccatccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attctctacctccctaactcctttcctccttctgccctcactgccccaccttcatccacc 260

                                                                       
Query: 61  cattgctccaagagggagtgattcaattcagaggaatttcaagaagaaatgcccacagga 120
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccttgctccaagagggagtgattcaattcagaggaatttcaagaagaaatgcccacagaa 320

                                                                       
Query: 121 tggtgttcaagatgtttggaaattccacctgttccaaaacaaaatgctgcatgttctacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgttcaagatgtttggaaattccacctgttccaaaacaaaatgctgcatgttctacg 380

                                                                       
Query: 181 ttttcccccagagtctgatggtgataaagaatgaccaattagtgtcagaatctctagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcccccagagtctgatggtgataaagaatgaccaattagtgtcagaatctctagact 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)