BAC Information

Click to search

BAC

Clone NameMSMg01-122E13
Chromosome15 (Build37)
Map Location 62,496,403 - 62,496,811
singlet/doubletsinglet
Overlap genenone
Upstream geneMyc, Pvt1, LOC100040584, H2afy3
Downstream geneLOC100040430, Tsg101-ps, EG239502, EG432959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E13.T7 (MSMg01no122_e13.b1)MSMg01-122E13.TJ (MSMg01no122_e13.g1)
ACCAG332185AG332186
length9731,044
length of high quality
(start - end)		723 (38 - 760)762 (83 - 844)
definitionCHROMAT_FILE: MSMg01no122_e13.b1 PHD_FILE: MSMg01no122_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:34 2005CHROMAT_FILE: MSMg01no122_e13.g1 PHD_FILE: MSMg01no122_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTNNNNNGCAATGGGCGCTATAGACTCACTAAGGGAGAGGATCCG
CGGAATTCTTTGTTTAGCTCTGCGCTCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATCGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGGTGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTT
TTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAC
AAATTTGCAAATTGCTCCTTCCAATTCGTTGAAGAATTGAGTTGGAATTT
TGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATT
TTTTACCATGTTGATCCTGCCCAATCCTTGAGCATGGGAAGATCTTTTCC
ATCTTCTGAGAATCTTTCCTTAAATTTCTTTTCTTCCCAAGAATTTTGAA
AGTTTTTTTTCCTAACAAAATCC

CCTAGTTTANTNNTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGATCTGTTCTTACAAGA
TTTTCACAAGATCACCTTTTTCCAAATTCCACCATTTGCTGAAGTGCTAC
TACAAGTTGATAGCTATTGGAAGAAGAAGACTTACTTTGGGGAAAGGGGT
AGACACAGGTGAGTTGTCCATGCCTAAATGACTATACACCCACGAGTGTA
TGAGCATTACTGATAGGACTAAGAGGATTATAAAATACATTTTTAAATAG
GTTTTGAAGATATTGAAAGAGTGATGTGCTAAGGAAGACAGGATCAATTG
GATGGTGAGGTACAATGTACACATGTATGAAATATTCAAAAATAAAAATG
TAATTGCTGCTTTCCTTCCCTAGAAGGAATTATAGGGAAATTCTAGCATT
CCCTTGGCGCTCTCTTGGCATATAGCCTGCCAGTCTTAGCATGTTGCAGT
AATTATTTTAACGATGATTGTTTTCTCCCTAACAGGACAGTTTGCCATCT
TCCTCCTCTAGTAGAGATAATCAATAGACATATTGTACTTTACAGTTTGC
AATGAGCATCATGTACATTGCTGTATCTGAGTCTTATAAAAAATCACAGT
GAGACTGCTGAATGTAACATCTTAAAGACCAGAGAATGAATTTGGGGATT
TTAATTACTCACTGCAATTCACAGACAGTAGAATCTGGAAAGATGGCACA
ACTTTTAGAAAGAAAAGCACTCTTGCTCAATTCCCAGTCCTCTATAATAT
CTTAATTGTGTCATGTTCCTAAACATTTTATGTTTGATGATTAATTGAAT
TATTAAACTAGATTTAGTCTTTCTCACTGACAATGATCTTTGTAAAAATT
TGATATTTCTTTCAAATGAGAAATACTTGTAAAATATTGCCAAAAGTATT
ATGGGAGGAAGAAGATTATGTACCTTATTCCCCTTAGGTTCCTTATTATA
TTTTATTCCCTATTATATTATATTTTAAAATCCCTTCCCGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e13.g1 MSMg01no122_e13.g1 CHROMAT_FILE:
MSMg01no122_e13.g1 PHD_FILE: MSMg01no122_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:34 2005
         (762 letters)



>mm_chr15_62496203_62497364
          Length = 1162

 Score =  717 bits (371), Expect = 0.0
 Identities = 400/411 (97%), Gaps = 4/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatctgttcttacaagattttcacaagatcac--ctttttccaaattccaccatttgct 58
           |||||||||| |||||| |||||||||||||||  |  ||||||||| ||||||||||||
Sbjct: 609 ggatctgttcatacaagtttttcacaagatcacggc--tttccaaatcccaccatttgct 552

                                                                       
Query: 59  gaagtgctactacaagttgatagctattggaagaagaagacttactttggggaaaggggt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaagtgctactacaagttgatagctattggaagaagaagacttactttggggaaaggggt 492

                                                                       
Query: 119 agacacaggtgagttgtccatgcctaaatgactatacacccacgagtgtatgagcattac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agacacaggtgagttgtccatgcctaaatgactatacacccacgagtgtatgagcattac 432

                                                                       
Query: 179 tgataggactaagaggattataaaatacatttttaaataggttttgaagatattgaaaga 238
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 431 tgataggactaagaggattataaaatacatttttaaataggttatgaagatattgaaaga 372

                                                                       
Query: 239 gtgatgtgctaaggaagacaggatcaattggatggtgaggtacaatgtacacatgtatga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtgatgtgctaaggaagacaggatcaattggatggtgaggtacaatgtacacatgtatga 312

                                                                       
Query: 299 aatattcaaaaataaaaatgtaattgctgctttccttccctagaaggaattatagggaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 311 aatattcaaaaataaaaatgtaattgctgctttccttccctagaaggaactatagggaaa 252

                                                              
Query: 359 ttctagcattcccttggcgctctcttggcatatagcctgccagtcttagca 409
           |||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 251 ttctagcattcccttggcgctcccttggcatatagcctggcagtcttagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space:   866304
Effective search space used:   866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |