BAC Information

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BAC

Clone NameMSMg01-122E22
Chromosome15 (Build37)
Map Location 11,360,340 - 11,361,160
singlet/doubletsinglet
Overlap genenone
Upstream gene4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
Downstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E22.T7 (MSMg01no122_e22.b1)MSMg01-122E22.TJ (MSMg01no122_e22.g1)
ACCAG332202AG332203
length1,0371,048
length of high quality
(start - end)		847 (35 - 881)809 (75 - 883)
definitionCHROMAT_FILE: MSMg01no122_e22.b1 PHD_FILE: MSMg01no122_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:37 2005CHROMAT_FILE: MSMg01no122_e22.g1 PHD_FILE: MSMg01no122_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCCTCTTNNNNATCAGTGGGCGCTATAGACTACTATAGGGAGAGGATCC
GCGGAATTCCTCATTTCATTCTTCCTTTAAGAAGGACTTCTCAAAGAACT
GTCTTCATTTATTGCCTCTAGTTTCTTTTCTCTCATTTCCTTAAAGCACT
CCATTTACTCTTTCTCTATGTGAGGAGAAAAAATAAAACTTTTTTTTTCA
GTTATTTCTATTTGATGATCAGCCACAATTCCTATAACAACACACATATA
AATGAGAATAACATAGAAAATAATAAACAGAGAAAATCATACAAATGTAA
ATACTATTTTAAAAGAGTTATGACATTTTAGAAATGAAGACCTAAAGGAA
CAAGGATGTCTGTATGCTTGTTTGGACAACACAGAAATATGGTTAGAGGA
TGAAAATATGTTATGTGGTCATAAACCAAGGGTGACTTAGAAAAGATGGC
TGAAATCCCCCTGTGTTCTCTGTGTCTTCAAAGAAAAAGACATTGCGTCC
CTCGAGGTTCAGCATGGATACCCCTAGGATGGAACACCGTCATTTTTAGA
GGAAAGTCAAAGAAGTCAGCTATGGTGTCTTTCAGGGCAGGGGTGAGAAG
TAAAGCCGAGAACCTTTCTAGTTTCTGTTGGTTCCTTGAATGCTCTGATG
TCATATGTTGTGATAGAAATCCTGAACCAATCCCCTGCATCATCTGAAGC
TGCTCTCATTACCGTCTCATCTCTCTGATCCTCAGTTTACTAACTGCAGA
AGCAATTCTAGCTATTGTCCACTTGAACTTGAAATATATGACATAGATGA
AAACCAGCACCATCTGGAAACTTTGTCATTATGTCATGTTTTCCTTTTGT
CTTGCTCACCACTTCATTAGTCTCTAGTGTCTCCCGTCCACATTCATCCT
GTGATTTCATTCAGAACGACTTTCCTATCTACAAATCAACACTGAATTTA
TAACTGAAAATTCGAGAATTTCAGTTTGGATATTTTTTAGCTTTTCCTTG
AAGGGTCCTAAAAAAAAATTCTCAAACAAAAAATGGC

CATACATNNNNNTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTCAAGGACACAATGAGAAGACCA
AATCTATGGATGATCCGTAGTAGAGGAGAATGAAGATTTTCAACTTAAAT
GGCCAGCATATATCTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTA
AAGAGATGCTCATGAACATACAAGAAGCCTACAAAACTCCAAATAGATTG
GACCAGAAAAGAAATTCCTCCCAAAACATAATAATCAGAACAACAAATGC
ACAAAATAAAGACAGGGTATTAAAAGCAGTAAGGGGAAAATGTCAAGTAA
CATATAAAGGCAGGCCTATTAGAATTACTCCAGACTTCTCACCAGAGACT
ATGAAAGCCAGAAGATCCCAGATAGAAGTTATTCAGACCCTAAGAGAATA
CAAATGCCAGCCCAGGCTACTATACCCAGCAAGACTCTCAATCACCATAG
ATAGAGAAAACAAAGTATTCAGTTTGGAGCTGAGACAAAAGGATGGACCA
TCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCAAACG
ATGACACAATTGCATATACTAGCAAGCCTTTGTTGCAAGGACCGTGATAT
AGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGAT
GCTCACAGTCAACTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTA
GAGAAAGTACCCAAGGAGATAAAGAGATCTGCAACCCTATAGGTGGAACA
ACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATG
TATCAAAAGATGGCCTAGTCGGACATCACTGGAAAGAGAGGCCCATTGGT
CAGGCAAACTTTATATGCCCCCGTACAGGGGACGCCAGGGCCAAAAATGG
GAATGGGTGGTTAGGGGAACGGGNTGGGGGAAAGTTTTTTTTTTTTTTTT
TTTTTTCGTTCTTTTCTCTTCTTTTTCTCTCTCCCCTCTCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e22.b1 MSMg01no122_e22.b1 CHROMAT_FILE:
MSMg01no122_e22.b1 PHD_FILE: MSMg01no122_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:37 2005
         (847 letters)



>mm_chr15_11360122_11361370
          Length = 1249

 Score = 1450 bits (750), Expect = 0.0
 Identities = 807/832 (96%), Gaps = 15/832 (1%)
 Strand = Plus / Plus

                                                                        
Query: 20   gaattcctcatttcattcttccttta-aga-aggacttctcaaagaactgtcttcattta 77
            ||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||
Sbjct: 219  gaattcctcatttcattcttcttttata-acaggacttctcaaagaactgtcttcattta 277

                                                                        
Query: 78   ttgcctctagtttcttttctctcatttccttaaagcactccatttactctttctctatgt 137
             || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 278  ctgtctccagtttcttttctctcatttccttaaagcactccatttactttttctctatgt 337

                                                                        
Query: 138  gaggagaaaaaataaaac-tttttttttcagttatttctatttgatgatcagccacaatt 196
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  gaggagaaaaaataaaacttttttttttcagttatttctatttgatgatcagccacaatt 397

                                                                        
Query: 197  cctataacaacacacatataaatgagaataacatagaaaataataaacagagaaaatcat 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  cctataacaacacacatataaatgagaataacatagaaaataataaacagagaaaatcat 457

                                                                        
Query: 257  acaaatgtaaatactattttaaaagagttatgacattttagaaatgaagacctaaaggaa 316
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 458  acaaatgtaaatactattttaaaagagttatgatgttttagaaatgaagacctaaaggaa 517

                                                                        
Query: 317  caaggatgtctgtatgcttgtttggacaacacagaaatatggttagaggatgaaaatatg 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  caaggatgtctgtatgcttgtttggacaacacagaaatatggttagaggatgaaaatatg 577

                                                                        
Query: 377  tta-tgtggtcataaaccaagggtgacttagaaaagatggctgaaatccccctgtgttct 435
            ||| ||||||||||||||||||||||||||||||||||          || |||||||||
Sbjct: 578  ttactgtggtcataaaccaagggtgacttagaaaagat----------cctctgtgttct 627

                                                                        
Query: 436  ctgtgtcttcaaagaaaaagacattgcgtccctcgaggttcagcatggatacccctagga 495
            ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 628  ctgcgtcttcaaagaaaaagacattgcttccctcgaggttcagcatggatacccctagga 687

                                                                        
Query: 496  tggaacaccgtcatttttagaggaaagtcaaagaagtcagctatggtgtctttcagggca 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  tggaacaccgtcatttttagaggaaagtcaaagaagtcagctatggtgtctttcagggca 747

                                                                        
Query: 556  ggggtgagaagtaaagccgagaacctttctagtttctgttggttccttgaatgctctgat 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ggggtgagaagtaaagccgagaacctttctagtttctgttggttccttgaatgctctgat 807

                                                                        
Query: 616  gtcatatgttgtgatagaaatcctgaaccaatcccctgcatcatctgaagctgctctcat 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  gtcatatgttgtgatagaaatcctgaaccaatcccctgcatcatctgaagctgctctcat 867

                                                                        
Query: 676  taccgtctcatctctctgatcctcagtttactaactgcagaagcaattctagctattgtc 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  taccgtctcatctctctgatcctcagtttactaactgcagaagcaattctagctattgtc 927

                                                                        
Query: 736  cacttgaacttgaaatatatgacatagatgaaaaccagcaccatctggaaactttgtcat 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  cacttgaacttgaaatatatgacatagatgaaaaccagcaccatctggaaactttgtcat 987

                                                                
Query: 796  tatgtcatgttttccttttgtcttgctcaccacttcattagtctctagtgtc 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  tatgtcatgttttccttttgtcttgctcaccacttcattagtctctagtgtc 1039


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 847
Length of database: 1249
Length adjustment: 10
Effective length of query: 837
Effective length of database: 1239
Effective search space:  1037043
Effective search space used:  1037043
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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