BAC Information

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BAC

Clone NameMSMg01-122E24
Chromosome15 (Build37)
Map Location 80,481,285 - 80,631,149
singlet/doubletdoublet
Overlap geneAW544981, Tnrc6b
Upstream gene4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E24.T7 (MSMg01no122_e24.b1)MSMg01-122E24.TJ (MSMg01no122_e24.g1)
ACCAG332206AG332207
length1,0311,071
length of high quality
(start - end)		696 (104 - 799)719 (81 - 799)
definitionCHROMAT_FILE: MSMg01no122_e24.b1 PHD_FILE: MSMg01no122_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:37 2005CHROMAT_FILE: MSMg01no122_e24.g1 PHD_FILE: MSMg01no122_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,630,458 - 80,631,149)(80,481,285 - 80,481,987)
sequence
TATGCGGCGTATAGACTCATAAGGGAGAGGATCCGCGGAATTCTACTAAT
CCAACTGCCTTATATTTCAGGGTCAAGTGTGTCTTCCTGTTTAATGCCTT
GATACCAATTCCTCTCACACAAAAGCTGAATTTATGTCACCATAAAATTT
ACATGGAATCCTTTAGCACTCCAGGCACCTCTCTGCTTATAGCCATTACT
AATATAACAACAACATTACTTTAAAAAATAATAAAATGATGGCTCTTCTG
AGACAGAAGACTAATTATCCTTACGTATTCAAATGGAAAGTCTTTTTGTT
AAATTAGCGTGAAAAGTCCCTTCATCTACACACAATTGGCCCAAAGAAAC
AGGCCATTTTCAGCACGAGAGGCCAACCCATTTTAACAGTGAATAAAGCT
TTTGAAAGCACTACACACCCTCTTCCACACTGTCAAAATTTTCAAATTGG
TCCAGCAGTTTCCCCATTTTATTTTTTGAACACTTTAAGGCCCAGCTGGT
TAGCATATCATAATTAGATTAATTAAAAGGGAAACAACAACCAAAAAAAA
AAAACCCCAAAAACCCCTTCTGATCAAAATTATTCCATTTATGCTTAATT
AGCTTTAATCCAAGTCTACACATTTAATGGGGATATGACCGTTTGCATAT
TTTAAATGTCTTTTCTAAACTATACTTTGTAGCAGACTTAGAAGAATGGT
ATCTTTCTCTTGCCAATATGCCACAGCACAAATCAAAGGGGACACAAATT
AGGAGAAGAGAGGAAAGAAAACAAGGCTTCTCAGAGCCAAGGATCTGCCG
GGGGAGGGGGAGGGTGTTTTGTCTCTTTCTCTCTTCTTATTTTATTCTTC
TCTTTTTCTTCATCTTCTCCTCTTCATCCCTCTTCTCTCTTCTCTCCTAT
TTCTTTTTAATCTTAATTATTCTTCTTTCTCTTCATCTCTCTCTTCTCTC
TCTATTTATTCCACTTATTTTCCTCTTCTTTATCTCTCTCTTATCCCTTT
CTTATATTTTGTTCTCTCTCTTAATTTCTCC

TTGTTTTTATTCACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTATTGAGGTATCCTCATTAGCAG
GGTTCGATTCCTTAGGAAACAGGAGAGTCACCCCAAACCATGAAGGGAGA
CCAAGGACTCCCAGGGGCTGAGCCTAGGAGGCCAGCACCAAACTGTCTAC
CTGGGGCTCAGATCTCTTTGGATTCTGCTACTGCTTCCTGGGAAGTAGGT
AAGGAAGAGAGCATGAGCCATCATACCCCCCAACTCTCTCTCTCTCTCTC
TCTGGCTGCACAGCCAACTGCAAGTACACGGTCTCTGATTTTGGCCGACA
CACCATAGGTGCGACTTCATGACATCTGAGCAGAGAACTTCTAAGAAGAG
CCAGTTCCTGTTGACCAATCAGAGTTTCCTCCCCACTTGCTGAAAAATCA
CTTCATTTCGAATATCCAGCAGCTACCATGGCCCACTCCCCATTACATGG
TCTCAGGCTGATCTAAGGAAATTCTTTCCAAGATCTCAAGTATGTGAGCA
TTGTCTGGGGGCCGTGTTAAAATGCTGGCTCTGACTCAGCCTTATATCTA
TCTCTAACAAGCTCCCAGGTGCTTTGATCAGCAAGGGCATTGGCCTCACA
AATCTAATTGGATTCTTTTTCTGGGGATAGTCAGCCACTGCTCTCTGTTG
CTAGCGAATAAGTCACTTTGGCTTTGGGACAGGCACAACTCGTTACTGTC
TTTATGACACCATTCCTGTTTGGCGGCCAGTGACTTCTTTTTTACATCTT
CATCGGGGATCAGAAATTTTTCCAAGTGACAGGCATTTGGCTTGGAGACT
CCCACAGGGAATTCCCTTACTAAGAAATCACTTTTTACAGGAAGCAAAAA
GCTTGTGGGAAAGGTGCAGGTAAAAACTTTCTCAGGGAAATCCCTTGAAA
AGAATAAAAAATCCATTGCCCCATCCACTTTTGGGCCTCCTGGGGCAAGG
GGCAGGGGAAATTATTCACCTAAAATTCTCCAGTTTCCACCAGGCCCCAA
AAATAAGGGGGAACACAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e24.b1 MSMg01no122_e24.b1 CHROMAT_FILE:
MSMg01no122_e24.b1 PHD_FILE: MSMg01no122_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:37 2005
         (696 letters)



>mm_chr15_80630258_80631349
          Length = 1092

 Score = 1319 bits (682), Expect = 0.0
 Identities = 691/696 (99%), Gaps = 4/696 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaattcctctcacacaaaagctgaatttatgtcaccataaaatttacatggaatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 accaattcctctcacacaaaagctgaatttatgtcaccataaaatttacatggaatcctt 833

                                                                       
Query: 61  tagcactccaggcacctctctgcttatagccattactaatataacaacaacattacttta 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tagcactccaggcacttctctgcttatagccattactaatataacaacaacattacttta 773

                                                                       
Query: 121 aaaaataataaaatgatggctcttctgagacagaagactaattatccttacgtattcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaaaataataaaatgatggctcttctgagacagaagactaattatccttacgtattcaaa 713

                                                                       
Query: 181 tggaaagtctttttgttaaattagcgtgaaaagtcccttcatctacacacaattggccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tggaaagtctttttgttaaattagcgtgaaaagtcccttcatctacacacaattggccca 653

                                                                       
Query: 241 aagaaacaggccattttcagcacgagaggccaacccattttaacagtgaataaagctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagaaacaggccattttcagcacgagaggccaacccattttaacagtgaataaagctttt 593

                                                                       
Query: 301 gaaagcactacacaccctcttccacactgtcaaaattttcaaattggtccagcagtttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaaagcactacacaccctcttccacactgtcaaaattttcaaattggtccagcagtttcc 533

                                                                       
Query: 361 ccattttattttttgaacactttaaggcccagctggttagcatatcataattagattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccattttattttttgaacactttaaggcccagctggttagcatatcataattagattaat 473

                                                                       
Query: 421 taaaagggaaacaacaaccaaaaaaaaaaaaccccaaaaaccccttctgatcaaaattat 480
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taaaagggaaacaacaac----aaaaaaaaaccccaaaaaccccttctgatcaaaattat 417

                                                                       
Query: 481 tccatttatgcttaattagctttaatccaagtctacacatttaatggggatatgaccgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tccatttatgcttaattagctttaatccaagtctacacatttaatggggatatgaccgtt 357

                                                                       
Query: 541 tgcatattttaaatgtcttttctaaactatactttgtagcagacttagaagaatggtatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgcatattttaaatgtcttttctaaactatactttgtagcagacttagaagaatggtatc 297

                                                                       
Query: 601 tttctcttgccaatatgccacagcacaaatcaaaggggacacaaattaggagaagagagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttctcttgccaatatgccacagcacaaatcaaaggggacacaaattaggagaagagagg 237

                                               
Query: 661 aaagaaaacaaggcttctcagagccaaggatctgcc 696
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaagaaaacaaggcttctcagagccaaggatctgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1092
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1082
Effective search space:   742252
Effective search space used:   742252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no122_e24.g1 MSMg01no122_e24.g1 CHROMAT_FILE:
MSMg01no122_e24.g1 PHD_FILE: MSMg01no122_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:38 2005
         (719 letters)



>mm_chr15_80481085_80482203
          Length = 1119

 Score = 1278 bits (661), Expect = 0.0
 Identities = 697/719 (96%), Gaps = 16/719 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggtatcctcattagcagggttcgattccttaggaaacaggagagtcaccccaaacca 60
           ||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||
Sbjct: 201 tgaggtatcctcattagcagggttcgattcgaaagggaacaggagagtcaccccaaacca 260

                                                                       
Query: 61  tgaagggagaccaaggactcccaggggctgagcctaggaggccagcaccaaactgtctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagggagaccaaggactcccaggggctgagcctaggaggccagcaccaaactgtctac 320

                                                                       
Query: 121 ctggggctcagatctctttggattctgctactgcttcctgggaagtaggtaaggaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggggctcagatctctttggattctgctactgcttcctgggaagtaggtaaggaagaga 380

                                                                       
Query: 181 gcatgagccatcataccccccaactctctctctctctctctctggctgcacagccaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgagccatcataccccccaactctctctctctctctctctggctgcacagccaactg 440

                                                                       
Query: 241 caagtacacggtctctgattttggccgacacaccataggtgcgacttcatgacatctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtacacggtctctgattttggccgacacaccataggtgcgacttcatgacatctgag 500

                                                                       
Query: 301 cagagaacttctaagaagagccagttcctgttgaccaatcagagtttcctccccacttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagaacttctaagaagagccagttcctgttgaccaatcagagtttcctccccacttgc 560

                                                                       
Query: 361 tgaaaaatcacttcatttcgaatatccagcagctaccatggcccactccccattacatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaaaatcacttcatttcgaatatccagcagctaccatggcccactccccattacatgg 620

                                                                       
Query: 421 tctcaggctgatctaaggaaattctttccaagatctcaagtatgtgagcattgtctgggg 480
           ||||||                ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcag----------------tctttccaagatctcaagtatgtgagcattgtctgggg 664

                                                                       
Query: 481 gccgtgttaaaatgctggctctgactcagccttatatctatctctaacaagctcccaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gccgtgttaaaatgctggctctgactcagccttatatctatctctaacaagctcccaggt 724

                                                                       
Query: 541 gctttgatcagcaagggcattggcctcacaaatctaattggattctttttctggggatag 600
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 725 gctttgatcagcaagggcatcggtctcacaaatctaattggattctttttctggggatag 784

                                                                       
Query: 601 tcagccactgctctctgttgctagcgaataagtcactttggctttgggacaggcacaact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tcagccactgctctctgttgctagcgaataagtcactttggctttgggacaggcacaact 844

                                                                      
Query: 661 cgttactgtctttatgacaccattcctgtttggcggccagtgacttcttttttacatct 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cgttactgtctttatgacaccattcctgtttggcggccagtgacttcttttttacatct 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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