BAC Information

Click to search

BAC

Clone NameMSMg01-123C22
Chromosome15 (Build37)
Map Location 14,396,263 - 14,396,892
singlet/doubletsinglet
Overlap geneLOC674819
Upstream geneLOC666708
Downstream geneLOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123C22.T7 (MSMg01no123_c22.b1)MSMg01-123C22.TJ (MSMg01no123_c22.g1)
ACCAG332856AG332857
length1,2041,126
length of high quality
(start - end)		689 (87 - 775)657 (83 - 739)
definitionCHROMAT_FILE: MSMg01no123_c22.b1 PHD_FILE: MSMg01no123_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:33 2005CHROMAT_FILE: MSMg01no123_c22.g1 PHD_FILE: MSMg01no123_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGAAATCGNNNNNGGTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAACATTACAGGCCTAACAATAGGTTTACCAAGTGTTT
TGCCTTCCTGGAGGTAGACAACATTAAACCTTGGCCAATCAAAATAGAAC
TATACAAGGGACCCAGCGACTTTAAAAGAAAGAAATTGCAATTATTGCCC
AAGAAACCACTTTATCCTCATCAACATCCAAGTTTGCACAAGGAATGATA
TTGATGCAAATAACCAAGAGCTTGTGTGACTTTTACCACTCAGAACCAAT
CATAGCTCTGTGTAGCATAATCACCCTTCATCAGATCACCCTTCATCAGA
TCACCCTTCATCAGATCACCCTTCATCAGATCACCCTTCATCAGATCACC
CTTATCAGATCACCCTTCATCAGATCACCCTTCATCAGATCACCCTTCAT
CAGATCACCCTTCATCATATCACCCTTCATCAGATCACCCTTCATCAGGC
AGGCTATGAGCCCTACCCATGCCATTTGACCAAGCAAGTCTATTGCACAG
CCAGATCCCATATCAAAACTTCAGCAAGTCACTGACCTACCCTAAGAATG
TGTTACAGTTTACATCTCTGCTCCCTTCTGCTCCAGTACATTCTCCTGGT
TTCAATGTCATCCTGTGAGTTGAGGTGAGTAGAACTGTTCTGAGAGGAAC
TGGACTAGTTACATTGCTTAGCCAAGTATCCTTAGAAGAAACCTAGCCTG
ATGCCTTGGGTCTCCTGCACAGAAAGTGTGAGCTGGCCAGATGAGAATCC
CACACTGAGTGTTCCCTGCATACCCCGATTGACTTCCTGAAGAGAGCAGG
TTTATAGTCAGGTGGCTCATGTGAACCTTCCCTATTGTACCGCTAAATTC
TTTCCTGGAGGTTCTAGGCTTAACACTGGAACTATCCCTCTCAGAATAGC
TAGGGCATTAGAAAATGTGTTTACCATATCTTTTAAATTGTATCCCTTAA
GAACTATTGGGCTCTCAATCAAAACTTGTTGCCAAGGATAACCTTGTTGC
TTTTTCTGGACTACCTCTTGTGAAAAACTTTAAAACTTCCAAACCTTCTC
CCAAATTTTTCCACATTCTTTTAAAAAATATGCCCTTCTTTTTAACACTT
ACCCTCAAAACACCCTCTCTCCTTTTATTTCTCCCACTTTAAATATCTCC
TCTA

NAGAATTTNNNNNNNAAAGATGGGAGCCGTGGGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATTCTTAATCATCAGGAA
ATGTAAATCAAAGCAACCCTGAGATTTCACATCACACCAGTCAGAATGGC
TAAGATCAAAAACTCAGGTGATAGCAGATGCTGGCAAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTAGGATTACAAGCTTGTACAACCACTA
TGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCA
TTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTACTCATAATA
GCCACAAGCTGAAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATAGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATACCTAGGCAAATCGATGGACCTGAAGGGCATCATC
CTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTACTCACT
GATAACTGGATATTAGCCCAGAAACTTAGAATACCCACGATGCAAGATAC
AATCTGCAAAACACATGAAACTCAAAAAGAACAAAGACCAAAATGTGGAC
ACTTTGCCCCCTTCTTAGAATTGGGAATAAAACCCCCATGGAAGGAGTTA
CCGAGACAAAGTTTGAAGCTGAGAAGAAAGGATTGACCCTTCCAAAGACT
GCCATACCCGGGAAATCCATCCCCATAATCCGCCTCCCAAACGCTGAACC
CCATTGCATACCAATACCCAGAATTTTGCCTGAAAGGCACCCCAGAAAAT
AGCCTGCCCCCTTGGTGAAACACTATGGTCCGGGGGCCCTTAATCAAAAC
ACCCGTAAATTTGGGATTGCCTCCACCAGTTCCCGCTTTATTTGGAAATG
GGAATCCACCAGGGGGTCTTAAAAGCAAAAAGTACCCCCTCAGGGTAACC
TTATAATGTGTGGTTCCCTGCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_c22.b1 MSMg01no123_c22.b1 CHROMAT_FILE:
MSMg01no123_c22.b1 PHD_FILE: MSMg01no123_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:33 2005
         (689 letters)



>mm_chr15_14396063_14397152
          Length = 1090

 Score = 1065 bits (551), Expect = 0.0
 Identities = 626/689 (90%), Gaps = 59/689 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaccaagtgttttgccttcctggaggtagacaacattaaaccttggccaatcaaaata 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tttaccaagtgttttgccttcctggaggtagacaaaattaaaccttggccaatcaaaata 260

                                                                       
Query: 61  gaactatacaagggacccagcgactttaaaagaaagaaattgcaattattgcccaagaaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactatacaagggacccagtgactttaaaagaaagaaattgcaattattgcccaagaaa 320

                                                                       
Query: 121 ccactttatcctcatcaacatccaagtttgcacaaggaatgatattgatgcaaataacca 180
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 321 ccactttatcctcatcaacatccaagtttgcacaaggaatgatcctgatgcaaataacca 380

                                                                       
Query: 181 agagcttgtgtgacttttaccactcagaaccaatcatagctctgtgtagcataatcaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagcttgtgtgacttttaccactcagaaccaatcatagctctgtgtagcataatcaccc 440

                                                                       
Query: 241 ttcatcagatcacccttcatcagatcacccttcatcagatcacccttcatcagatcaccc 300
           |||||||||||||||||||||||||||||||||                           
Sbjct: 441 ttcatcagatcacccttcatcagatcacccttc--------------------------- 473

                                                                       
Query: 301 ttcatcagatcacccttatcagatcacccttcatcagatcacccttcatcagatcaccct 360
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 -----------------atcagatcacccttcatcagatcacccttcatcagatcaccct 516

                                                                       
Query: 361 tcatcagatcacccttcatcatatcacccttcatcagatcacccttcatcaggcaggcta 420
           |||||||||||||||||||||               ||||||||||||||||||||||||
Sbjct: 517 tcatcagatcacccttcatca---------------gatcacccttcatcaggcaggcta 561

                                                                       
Query: 421 tgagccctacccatgccatttgaccaagcaagtctattgcacagccagatcccatatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgagccctacccatgccatttgaccaagcaagtctattgcacagccagatcccatatcaa 621

                                                                       
Query: 481 aacttcagcaagtcactgacctaccctaagaatgtgttacagtttacatctctgctccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacttcagcaagtcactgacctaccctaagaatgtgttacagtttacatctctgctccct 681

                                                                       
Query: 541 tctgctccagtacattctcctggtttcaatgtcatcctgtgagttgaggtgagtagaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctgctccagtacattctcctggtttcaatgtcatcctgtgagttgaggtgagtagaact 741

                                                                       
Query: 601 gttctgagaggaactggactagttacattgcttagccaagtatccttagaagaaacctag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gttctgagaggaactggactagttacattgcttagccaagtatccttagaagaaacctag 801

                                        
Query: 661 cctgatgccttgggtctcctgcacagaaa 689
           |||||||||||||||||||||||||||||
Sbjct: 802 cctgatgccttgggtctcctgcacagaaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space:   733320
Effective search space used:   733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |