BAC Information

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BAC

Clone NameMSMg01-123H07
Chromosome15 (Build37)
Map Location 15,785,511 - 15,785,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123H07.T7 (MSMg01no123_h07.b1)MSMg01-123H07.TJ (MSMg01no123_h07.g1)
ACCAG333054AG333055
length1,2511,245
length of high quality
(start - end)
284 (135 - 418)278 (123 - 400)
definitionCHROMAT_FILE: MSMg01no123_h07.b1 PHD_FILE: MSMg01no123_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:13 2005CHROMAT_FILE: MSMg01no123_h07.g1 PHD_FILE: MSMg01no123_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAACCTCANNAGACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGTCTTATACTCAGAACCCCTATAAAACCCCCATAAACAC
TAAGGCATCTCTCTATCACGCCCTTAAACCCACCCACACACACACACACA
CACACACACACACACACACACACACACACACACACACTTTGGTAACATTA
AAAGAATATATAAAACCAGTTCCCCATAATAGAAAGATTTGTGTGTGTTA
TTGCCATAGAAGGTTGAGGTAGTTATGGACTAGTTGGTATCCTTCTCATC
TTCAGTTTCTTCATTCTCCTCAGAATAATGTGCAACTGCCTCTTGTGTCA
TGCTGAAAGGCTTTGTGGAGACTTGCACACCCCAGGCCCACATCCAGTTT
ATCAAGTGTGAATATCCCAGTGGACCACGAATTACATAAATGGATGACCC
CAATATAGAAGAGGAACATGCTTCCAGGATGACACAAGAAGTCACTGGGA
TTCTTTCAAGGAAGACACAGAGTCAACGATTTGAATCGAAGGTACAAGCT
CAAAGGGTAGAGGTGCGTTAAAGCCTTCTCCTTTTGTATTCCGCCTCCCC
TTTGCTCATAAGTTGAAATTAAGCCCAGGCTCTCAGACTCTACTTCCTAG
AAGAAATTAACCATAGCTGACACTAAAGAACGTGCCGAATAAGCCAAAAA
GTTATAGTTAGAAATCACCTGCACTCCGATACCTCAATGTCATAAAATCC
CCCCGTTCACCATCTGTACTCCACCCTTCTTACCCCACTCAGGACCAATC
CACTAAAACATCAACCTGAAAATACCTTGCGCAGCTAGCCAAAAATACGG
AACCCCCCTCACCGCCTTGCCTTTAAACCTCTCCACAACGGAAAAAAACA
CCCAACAACCCAACCCCACCCACACCACACACCCACACACCCCAAACACC
CAACACAAACAAACCCCAAACCCCCGGCCCCTGAAAGAAAAAAACCCGGC
CGCCCCCAAACAAAACCTATTCCCCCCCCCATGCAACTCCCCCGGAAAGA
CCCCGGCAATTAAACTCCTCATCCGGCGGCGGCCCCAATAAAAAACAACT
CCCCTGGGCTCTTACCCTTTCAACCTACTCTTACTTCTGAATACAACAAC
ACCTCGTTCCGTCAACTTTCCACACACAGCACCAGGAGGCTACAGTCTCG
CGCGACCTCCCCCTCTCCTAGAGACGCACCGCACCCCTCTCGCTCTAATA
G
NNCCGTTGACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTTATCTTTCCAAACTTTTATCATGAATG
GGTGTTGGACCTTTTCAAATGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTA
TTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CTTTTTATGAGTTGGATAGAGTACCTTCTACTTCTATTTTGTGAAATAGT
TTGTGTTTAACCGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCGTCTGCTCCTGGGCTTTTTATGGCTGCGAGACTATTAATAA
CTGCTTCTATTTCTTTAGGTGACATGGGACTTGTTTACATCGTCTACTTC
ATCCTGACTCCATCTTGGTACCTGGTATCTTGTCCACAAATTTGTCCATT
TCGTCCAGCTTTTCCCGTTTTGTTGAGTATAACCTTTTGTACAAGGATCT
CATGGCCTACTGATACGAGATCTTGTAAATTTATTGCAACTTACCTTTCT
AAACTGCTTGAAGCTTTTCAAGCCTGTTCATTTTTTTGAAGTTGCCATGT
CTAATGAATTTTCTTTATAGATATTTTGTTTATCCTATATTCCACCTTTT
GCCATTAAATCATGTTTGTCTCTTATTTTAATAATTCCCTTTATCTTGCT
TCCCCGTTGTATTCATATCTCAATTATTTTTATCTTTTTTGGCTTTTTTT
TTTCCTTTCTACTAACTCTACTTTCCTTTTTTTCTTTTTCTCTCTTTTTC
TACTTTTACCTCTTTTTCTTCACTTCTCCTTCTCTTCTTTCTATTCTCCT
TTCTCTCCTTTCTAATTCTTTCCTTCTCATCCCTTGTTCTTCTTCTTCTA
TCTTTTCTTCGACCCCTTTCTTTTTCTCCTTTTCCCTATCTCTCTCTTAT
TTTCTCCTTTCTTCACTTCTTCCTTTGCTTCTTCCACTTCTCTTTCTCTC
TCTCTCCTCCTCTTCTCTATCTCTCTATCCTCTTCATCTCGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_h07.b1 MSMg01no123_h07.b1 CHROMAT_FILE:
MSMg01no123_h07.b1 PHD_FILE: MSMg01no123_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:13 2005
         (284 letters)



>mm_chr15_15785258_15785938
          Length = 681

 Score =  516 bits (267), Expect = e-151
 Identities = 278/283 (98%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   acacacacacacacacacacacacacacacacacacacacacacacacacactttggtaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 533 acacacacacacacacacacacacacacacacacacacacacacacacatactttggtaa 474

                                                                       
Query: 62  cattaaaagaatatataaaaccagttccccataatagaaagatttgtgtgtgttattgcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cattaaaagaatatataaaaccagttccccataatagaaagatttgtgtgtgttattgcc 414

                                                                       
Query: 122 atagaaggttgaggtagttatggactagttggtatccttctcatcttcagtttcttcatt 181
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 413 atagaaggttgaggtagttatggactagttggtatc---ctcatcttcagtttcttcatt 357

                                                                       
Query: 182 ctcctcagaataatgtgcaactgcctcttgtgtcatgctgaaaggctttgtggagacttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 356 ctcctcagaataatgtgcaactgcctcttgtgtcatgctgaaaggctatgtggagacttg 297

                                                      
Query: 242 cacaccccaggcccacatccagtttatcaagtgtgaatatccc 284
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cacaccccaggcccacatccagtttatcaagtgtgaatatccc 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 681
Length adjustment: 9
Effective length of query: 275
Effective length of database: 672
Effective search space:   184800
Effective search space used:   184800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)