Query= MSMg01no123_i24.b1 MSMg01no123_i24.b1 CHROMAT_FILE:
MSMg01no123_i24.b1 PHD_FILE: MSMg01no123_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:28 2005
(784 letters)
>mm_chr15_65489541_65490724
Length = 1184
Score = 1404 bits (726), Expect = 0.0
Identities = 759/770 (98%)
Strand = Plus / Plus
Query: 15 gaattccactgagctcctggcagcaaatgagatggctgcccccaagccatacaatggatg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattccactgagctcctggcagcaaatgagatggctgcccccaagccatacaatggatg 274
Query: 75 ttgttgtttgaaggaggaagtattaccactgaatacattttgttttcagtcttgtgtttc 134
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgttggttgaaggaggaggtattaccactgaatacattttgttttcagtcttgtgtttc 334
Query: 135 tgttttgtttgatgatttttctttacagaaagaaagaaacatttcaaatgtcatcatccc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgttttgtttgatgatttttctttacagaaagaaagaaacatttcaaatgtcatcatccc 394
Query: 195 taaaatattcatctagaagattatgtcccctacagtaaatattatttggatttattaatc 254
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taaagtattcatctagaagattatgtcccctacagtaaatattatttggatttattaatc 454
Query: 255 ctaggatatctacatataaaaggcttctataatcctttaaaggcttatataatattatat 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctaggatatctacatataaaaggcttctataatcctttaaaggcttatataatattatat 514
Query: 315 tctcttttagtcggaaaatctaccataagatttatgacccttaataaaaaaggtcaattg 374
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctcttttagtctgaaaatctaccataagatttatgacccttaataaaaaaggtcaattg 574
Query: 375 ctattgaaccttgtaactatattaattactactggtcttgtgcaaaattttgtgcttaca 434
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 575 ctattgaaccttgttactatattaattactactggtcttgtgcaaaaggttgtgcttaga 634
Query: 435 aacaatagttatagaagctgaagaaatgatcctccagatgaatcctttagtctcatcact 494
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 635 aacaatagttatagaagctgaagaaatgttcctccagatgaatcctttagtctcataact 694
Query: 495 agtgctgcaacaaaacaccagctgcagccttccatctgccttcatctcctatggatccca 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agtgctgcaacaaaacaccagctgcagccttccatctgccttcatctcctatggatccca 754
Query: 555 cagaccatccatacctcaccacagcctccctccccaacttgttgtatcccagaacccaac 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cagaccatccatacctcaccacagcctccctccccaacttgttgtatcccagaacccaac 814
Query: 615 tctagcaggcctatccccctgcctatttgaccaaggtccacttctctcagggcaacaagt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tctagcaggcctatccccctgcctatttgaccaaggtccacttctctcagggcaacaagt 874
Query: 675 aggacaaaggcaaatccatacctctcctactgctcctaagagccaaccccacagtctcat 734
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 aggacaaaggcaaatccacacctctcctactgctcctaagagccaaccccacagtctcat 934
Query: 735 atccagctctctagcaggaaaactgctcttgtctttctttcctctctgat 784
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 atccagctctctagcaggaaaactgctcttgtctttctttcctctctgat 984
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 784
Length of database: 1184
Length adjustment: 10
Effective length of query: 774
Effective length of database: 1174
Effective search space: 908676
Effective search space used: 908676
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no123_i24.g1 MSMg01no123_i24.g1 CHROMAT_FILE:
MSMg01no123_i24.g1 PHD_FILE: MSMg01no123_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:28 2005
(649 letters)
>mm_chr15_65512287_65513333
Length = 1047
Score = 1152 bits (596), Expect = 0.0
Identities = 635/652 (97%), Gaps = 10/652 (1%)
Strand = Plus / Minus
Query: 1 agttatcccctgctccatttcctgaccaagtcacaggccataagcttttaaattgacagc 60
|||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 965 agttatcccctgttccatttcctgaccaagtcacgggccataagcttctaaattgacagc 906
Query: 61 tgatgcatccgtacaatacaaaagatattttctctacaacatacagcgtttttttttttt 120
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 905 tgatgcatccatacaatacaaaagatattttctctacaacatacagc-----attttttt 851
Query: 121 ---ctgagttttctgagtctctcatgtccctcctctgaccctgcagacttgatgcttctg 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cccctgagttttctgagtctctcatgtccctcctctgaccctgcagacttgatgcttctg 791
Query: 178 tactgatttatttaattagtaattctgcaggccccaccccatgcaaatggtgagtctaca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tactgatttatttaattagtaattctgcaggccccaccccatgcaaatggtgagtctaca 731
Query: 238 ccaggcaacttcagattatacaaatcttccagaaactttattgactttttaaatgggatc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccaggcaacttcagattatacaaatcttccagaaactttattgactttttaaatgggatc 671
Query: 298 ttcacagatttttttttgtacattcacataaaaaagcaatgatgtgcaatttttcttttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttcacagatttttttttgtacattcacataaaaaagcaatgatgtgcaatttttcttttg 611
Query: 358 attttaatcttcactgagcattgaagaggaaagaaaaatatttttttttctctgaaagta 417
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 attttaatcttcactgagcattgaagaggaaagaaaaatattttttttt-tctgaaagta 552
Query: 418 ataagctttctcagggctcttgccaagggatttatttttttctattgttttagagaaaaa 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 551 ataagctttctcagggctcttgctaagggatttatttttttctattgttttagag-aaaa 493
Query: 478 aatgtaattcctcattaatgtaactttcaaactgctagttctaaagaaagactatttggg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aatgtaattcctcattaatgtaactttcaaactgctagttctaaagaaagactatttggg 433
Query: 538 ccttcactgtacttagggaaccttatggaggctatatagtattaaggcccacatgctcta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccttcactgtacttagggaaccttatggaggctatatagtattaaggcccacatgctcta 373
Query: 598 cctatgagtgtatctagattctgcaggtattagaggtgcaggtatttccctt 649
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctgtgagtgtatctagattctgcaggtattagaggtgcaggtatttccctt 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space: 662643
Effective search space used: 662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
