BAC Information

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BAC

Clone NameMSMg01-123K07
Chromosome15 (Build37)
Map Location 33,556,665 - 33,556,993
singlet/doubletsinglet
Overlap genenone
Upstream geneSema5a, LOC100040962, Sdc2, Pgcp, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123K07.T7 (MSMg01no123_k07.b1)MSMg01-123K07.TJ (MSMg01no123_k07.g1)
ACCAG333195AG333196
length1,2731,286
length of high quality
(start - end)
333 (132 - 464)332 (133 - 464)
definitionCHROMAT_FILE: MSMg01no123_k07.b1 PHD_FILE: MSMg01no123_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:38 2005CHROMAT_FILE: MSMg01no123_k07.g1 PHD_FILE: MSMg01no123_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCAATATTNNNNNCGAAATTTGGCGCTATAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCACAAGTTAGAATCCACCCTATTAAATAACCCTATTAAAA
ATGGGATATAGAGCTAAACCTTTAAGTATCCACTGAGGAATATTCAACAT
TCTTAGTCATCAAGGGAAATTCAAATCAAAACAACCTTGAAATTCCACCT
CACACTAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGTAGATGCT
GGCAAGGATATAGAGAAGGGCTCCTTCATTGCTGGTAGGATTGCAAGCTG
GTACAACAACCACTCTGAAAATCAGTCTGGCAGTTCCTTAGAAATTTGGA
CATAGTACAATCTGAGGACCCAGCTATACCACTCTAGGGCATCTACCCAA
AAAAAAATGTTCCTACATATAACAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATTATACCCCCCCCCCTAGAGAGAACCCAGATATCCCT
CAAAAAAGAAATAGATAGAAAAAATGTTGTACATTTACACAATGGAGTAC
TACTTAGCTATTAAAAACAATGACTTCATGAAATTCACAGCCAAAGGGAA
GGAACTATAAAATACCATCCTGAGTGAGGTAACCCAGTCACAAAAGAAAA
CACATGATATGTACTCACTGATAAGTGGATATTAGACATCCACAGCTTTG
TCTCTATCTCATCTCTATCTCTATCACTCAGTAAACTGACACTGTCATAC
ATTGCCTCACCTTAGCAGGTTTCTGTAACCTTGTGCAGCCTCCATGACCA
TTTTCCTCCTATACTTTTCACCCTTATAATACCAGCACCATGAAGACAAT
TAAAATTGTGCTGCCAGCTCTTTGATCATAGCTATTTGCTGTTTCCCTAC
CAAAGCTGGGAAAAATGCCTTTTCCAGCAGTAGTAACACCAAAGGCTTCG
GTATTTCTGTTTCCATGGGGGTTAGAAAGTCTAATTGAATTTTTATTGGA
CAAAGAGTTTTCTCCTTTAACCAGATCTATGTGAAGAATTAATAATGAAA
CCTTTTTGTATTTCTAAAACGAATTTACTTCCTAAATATTGTCTCCCAGT
AGAATGGCTATTGGGTTCCATTCCCCCCCTAGAAATAATAATTTCAGGGG
CTTTCCACTTTATTTTAAAACTTCTGCGGTTTCTCCCAATACGAATTTAT
CTATACAGCCCCAAAAACTTTTGTTTGTCCAATAACTTCCCTCTATCTTT
TAATAAAAGTGTATTCTTATATC
AGTTTCTTTNNNNTTCCACGGCTAGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAACCCGCCTTCCTTGGNG
ANGAACAGCAGNATGGAACCTTAAACTGACCCAACCCTTTCCTCTCCAAC
TTGCTTCTTGGCCGTGATGTTGGTGCAGGAATAGAAACCCTGACTAAGAC
AGTAGGTTTTGTTGATGGATCATTTAAATATCTTAACTAATGCCATGTCT
TCCATTCTGGTTGACCTGTAACTTCTCAGACTTCTCCTACTCTGATTCTG
GCCTTGCCCATGTGTCTTGAATCAGCCAGTGGGAAAGTAGTTAACTACAT
GTAAGTAGAAGCTTGAAGTACCTCTGAGTATTTCCACTGCCACTCACATG
TAGTGTTGATTTTTAGCTGACACTCTTCCATACTTTTAAATGTACTGACA
GGCACCTATCTGTTTTCCTACTCCCCAGGCTTCTACTGCCAGGACATGAC
AATGAGGCATCTCATAGGGAAGTTAGGGTTCATAAAGGGTTGCTACATCC
CAGTCCCACCCCTTTCCCTGACTTCTGCCTGGGAATCCTAGAGCCTGGCT
GCAAAATCATGCTATGTACTACTCTCGACCTCAGTATATTAGTTTGCTTC
TATGCTGCTGCAATGAAAGACTGACCTCAGTAACTTAGGGAAGAGTTTAT
TTGGCTTAAAGGTTCCAGGCCATCATCCGGAGAGGGCACCTTTGGAGCTC
AATTCAGGAACCCAGAAGCATGAATGGAAGCAGATCTGTTGGAGGAACCT
CGCATAATAATGTATTTGATAGTAAAAGTATAACCTCCCTCGCGAAGCTT
TACTGCTTACCAATGACCTCTATCTGTACTAAAGTTCTTTGATCTATATA
GACTTTGCACCCCCGCTAATTTTTGGCGTATGAAGGTGCTTTTATCTTCC
CGTCCTTTGTCAACTCATTTTCTATTTTCAAACCCCCTTATTTCATCTCC
TCTCCTTTCTTACTTCTCTCTTGCTCCCCATCTCCTCCACCTCTGCCAAC
TACTCCCCCAACTTCTCTTCTAACTCCCTATTTGCTGTTTCTCTTCTCTC
CTTTTCTTCTCCCCCTATCTCCCTATTCTCTCCCTATTTCCCTTCACTCT
TTTCCCTCTCCTCTCACCTCTTCTCTCCTTCGCTCTCCTCATCCATCTCT
TTCTTTCCCCTCTTCCTCCTACCTCTCTCTCTATCGCAATCCTTACACTC
TCCTCTCTTTCTCTTTCATTCTCTTCTCCGCCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_k07.g1 MSMg01no123_k07.g1 CHROMAT_FILE:
MSMg01no123_k07.g1 PHD_FILE: MSMg01no123_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:39 2005
         (332 letters)



>mm_chr15_33556465_33557194
          Length = 730

 Score =  598 bits (309), Expect = e-175
 Identities = 325/331 (98%), Gaps = 2/331 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccctttcctctccaacttgcttcttggccgtgatgttggtgcaggaatagaaaccctg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaccctttcctctccaacttgcttcttggtcgtgatgttggtgcaggaatagaaaccctg 260

                                                                       
Query: 61  actaagacagtaggttttgttgatggatcatttaaatatcttaactaatgccatgtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaagacagtaggttttgttgatggatcatttaaatatcttaactaatgccatgtcttc 320

                                                                       
Query: 121 cattctggttgacctgtaacttctcagacttctcctactctgattctggccttgcccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctggttgacctgtaacttctcagacttctcctactctgattctggccttgcccatg 380

                                                                       
Query: 181 tgtcttgaatcagccagtgggaaagtagttaactacatgtaagtagaagcttgaagtacc 240
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 381 tgtcttgaatcagccagtgggaaagtagttaacta--tgtaagtagaagcttgaagtacc 438

                                                                       
Query: 241 tctgagtatttccactgccactcacatgtagtgttgatttttagctgacactcttccata 300
           |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||
Sbjct: 439 tctgagtatttccactgccactcacatgtagtgttgaagtctagctgacactcttccata 498

                                          
Query: 301 cttttaaatgtactgacaggcacctatctgt 331
           |||||||||||||||||||||||||||||||
Sbjct: 499 cttttaaatgtactgacaggcacctatctgt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 730
Length adjustment: 9
Effective length of query: 323
Effective length of database: 721
Effective search space:   232883
Effective search space used:   232883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)