Query= MSMg01no123_k19.b1 MSMg01no123_k19.b1 CHROMAT_FILE:
MSMg01no123_k19.b1 PHD_FILE: MSMg01no123_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:43 2005
(289 letters)
>mm_chr15_66562714_66563401
Length = 688
Score = 487 bits (252), Expect = e-142
Identities = 264/268 (98%), Gaps = 1/268 (0%)
Strand = Plus / Plus
Query: 1 acagatggtcttcattactctgagaggcacgcagggtgaaaacaggcatttcaggaaaga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagatggtcttcattattctgagaggcacgcagggtgaaaacaggcatttcaggaaaga 260
Query: 61 cgtgataagttggcagcagtaagtcactgaactgcttatgcctgagcgtgtgcttgctgt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cgtgataagttggcagcagtaagtcactgaactgcttatgc-tgagcgtgtgcttgctgt 319
Query: 121 gtgtgttcaaggaatgtgccctggcttggcctccctgcaacggagtcacgacgaaaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 gtgtgttcaaggaatgtgccctggcttggcctccctgcaacggagtcacaacgaaaggcc 379
Query: 181 tttgaaggatttaggcctttcatctgctcatctggctcatctgttcctgtgtgtgtgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 tttgaaggatttaggcctttcatctgctcatctggctcatctgttcctctgtgtgtgtgt 439
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 268
||||||||||||||||||||||||||||
Sbjct: 440 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_k19.g1 MSMg01no123_k19.g1 CHROMAT_FILE:
MSMg01no123_k19.g1 PHD_FILE: MSMg01no123_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:43 2005
(365 letters)
>mm_chr15_66694318_66695082
Length = 765
Score = 621 bits (321), Expect = 0.0
Identities = 354/369 (95%), Gaps = 8/369 (2%)
Strand = Plus / Minus
Query: 1 cccctcatggagagcagcaactacaaggagaagcagcatccagtcgggaggtgctagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccctcatggagagcagcaactacaaggagaagcagcatccagtcgggaggtgctagccc 506
Query: 61 atcacttttcctgccagctataaatgtagcagtggctggcccccatttcagtaggatatc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 atcacttttcctgccagctataaatgtggcagtggctggcccccatttcagtaggatatc 446
Query: 121 agtgcccataattctaactctcacagaacctgtgccctgtgaatgcaagccccagatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgcccataattctaactctcacagaacctgtgccctgtgaatgcaagccccagatccc 386
Query: 181 tggacacaatcttgaagataagatacatactcagcatgtcaagggtcaccaacactaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggacacaatcttgaagataagatacatactcagcatgtcaagggtcaccaacactaggc 326
Query: 241 caaacctatgtgtagggagtcattttatagtctccataatattttt----tgagatggaa 296
||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 325 caaacctatgtgtagggagtcattttatagtctccataaga----tgcagtgagatggaa 270
Query: 297 gacaaggagacagacaggttgattatcagtgagacagtctttctacccccctgaaaatgg 356
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct: 269 gacaaggagacagacaggttgattatcagtgagacagtcaacctacccacctgcaaatgg 210
Query: 357 agaatcaca 365
|||||||||
Sbjct: 209 agaatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
