BAC Information

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BAC

Clone NameMSMg01-123N04
Chromosome15 (Build37)
Map Location 20,418,048 - 20,418,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123N04.T7 (MSMg01no123_n04.b1)MSMg01-123N04.TJ (MSMg01no123_n04.g1)
ACCAG333332AG333333
length1,2691,557
length of high quality
(start - end)
333 (131 - 463)---
definitionCHROMAT_FILE: MSMg01no123_n04.b1 PHD_FILE: MSMg01no123_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:04 2005CHROMAT_FILE: MSMg01no123_n04.g1 PHD_FILE: MSMg01no123_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCTACTNNGTTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCCTTAAATTTTGTATGACATTTACAATGCCTATCTTCTATTAC
TCTTTCACCCTCTTCCCTTCCATTACCCCAGCATCGCTTCAAAGCATCTT
GCTAATGAATAAGTAAATAAAGGCAAATATATTCCAAGAAATTGGGCAGT
GCAACCATGTCCCTATTTACATCTTTCAATTCTTTGGTGATTACTATCAA
CATACTACTCATTTAATGGAAATGTAACCTAAACTCCTAACATCATGCGT
GGAATAACACCCAGAAAATTCCTGCAAAATAACAGGAGAATTAAATGATT
GTAGGTCAAAGCATTATTTGCTCTAGGATGTGTTGTTTTCTAATTTTATA
TATTGTTACTGATATTGTATCCTTGAAATTCAGGACTGAATGTATTAGTC
TTTTTTTAATACTGAAAATTGTAAAATATAATTAATACATATATATTATT
ACATAAGATAAAAAATATATATGCATAGAAAATTGAAGTATTTAAAATTA
ACATCATGTAGTAAAAGGTAATTTACATCTTTGTCCATGCAATTACTCAT
TTTAAATTTGTTATTTAAACATGTATTCTTTAACCCATTTTCTGAAATTA
TATAGCCATCAAAGTTTCTAGCACTTATATCAATTTTAAAATTTATGCTA
ACAATTCCATTTGTATAATAACCAATAACCCAGAATGTTTTTTTAATTTT
ATACATCATCTTTATTTTATTTTACAATGAGCAACGCCTCCCTTCTGAAA
CACCTAAAAATGTGCGCAGTAAAGCCTCCCTCCGCAAAAATATTATCACC
ACCTTATGCACATGCCCCGGATCACTCCCACCCTGGCTCCCCATCCACCC
GACACCCACTTCTAGCCACCCTCTCCACCCCATTCCTCCACCAAACATTC
ATTTCCCTTGTCCCTCCCCGAACCCCCCAACTCCCTACCGCCAAAAACCC
CAACCCCCCCTTTTTTGCCACCCCACCCCACTTCTCGCACCACCATTCCC
CCCTACACTCCTTGTTCTTACAACCCCCAATCTTAACTCTAACTCTTCTC
AAACACCCTCGCATGTCCAATAACTGTACCTCGCATTTACACCCTCCCCT
CGCCCTCTCGTCCTGTCCCCTACCTACCATACCCGGTCCTCCTCCACTCT
CCTCGAGCGCTCTTCCCTCTCCTTTCCTCTCAATCCCCTCTCCTCTCCTT
ATACATCGCCCTCCCCTCG
NAATTTCTTCCTGCCTGCGCCGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXNGACCTCTACAGGCTCCTCCAACTCGAAGTGCCCAANGTG
AGGATGCCCTCTTTCCCCCCTTCCCAGAGACAAGAAAGCAATCCATAAGT
GGGGAGCGGATGCGAGGGAGGGAATTGCGCAGCCCCTCCTCCCCCCCTCC
TCCCCCCCCCCCCCTTCTTCCTCTCTCCTCCTCCCCCTCCTCCCCCTCCC
CCCTCCCTCCCCTCCTTCCCCTTTCCCTCTCCCCCCCTTCCCCCCTCCCC
CTCTTCCCCCCCCCTCCCCCCTCCCTTTCTCCCCCCCTCCTCTCCCCCCC
TCCCCCCCTCCTTTCCCCCCCCCCCCCCCCTCTCTCCCCCTCTCCCCCTC
CTCTCCCTCTCCCCTCTCTCCTCCTCCCCCCCTCCTCTCCTCTCCTCCTC
CCTTTTTTTTTTTCTCCCCCCCCCCTCTTCCCCTCTCCCCCTTCCTCCCC
GCTCCTCTCCCCCCCCCCCCCCCTTCTTCTTCCCCCCCCCCCCCTCCTTC
CTCCCCTCTCCCCCCTCCCCCCCTTCCCTCTCCTCCCCCTCTTCTCTTCC
CTCTCCTTCTCCCTCCCTCCCTCTCTTTCCCCTCCTCCCCTCCCCTTCTT
TTCTTCTCTCTTCTCCTTCTTTCTCTCTCCCTCCCCTCCCTCCTCTCCCC
CCCCCCCCTTTCTCCTCCCCCCTCCCTCCCTCCTCCTCCCTCCCCTCCCC
CTCCTCCTCCTTCCTCCCTCTCTCCCCTCCCTCCTCCTCCCCCTCCTCCT
CTCCTCCTCCTCTTCTCCCTCTCCCTCTTCCTCTCCCCCCTTCTCCTCTT
CCCCCCCCCCCCCCTCCCCCTTCCCCCCCCCCCCCTCCTCTCTCCCCCCT
CTCTCCTCTTTCTTTTCTCTCCCTCCCCCCTCTCCTCCCCCCCCTTTCCC
CCTCCTCCTCCTCTCTCTCTCCCCCCTCCCCTCCTCCCTCCCCCCCCTCC
CTCCCCCCCTCCTCTCCTTCCCCTCCCTTCCTCCTTCCGCCTCTCCTCCC
CCTCCTCCTCCGCCCTCTCCCTTTCCTCCCCTCCTCTCCCCCTCCTCCTC
CCTTCCCCCCTCCTTTCCTCTCCCCCTCCCCTCTCCCCCTCCTCCCTCCC
CCCCCTTCTCTCTCCTCCCCCCCTTCTCCCTCCCTCTCCCCTCCTCTCCC
CCCTTCCTCTCTCCCTCCTCCTTTCCCTCCCCCCCTCCCCCTCCTCCCTC
CCCCCCTCCTCCTCCCTCCCCCCCTCTCCCCCCCCCCTTCCCTTTCCCCC
CCTCTCCCTCCCCCCTCCTCCCCCTCCCCCTCACCCTCCTCTCTCTCCCC
CTCTCTCTTTCTCCCCTTCCCTCCCCTCTCCCTCCCTCTCTCTCTCTCTC
TCCCTTCCCCCTCTTCCCTCCTCACCCCCTCTCTCTCTCCTTCCTCTCCC
CTCCCTCCCTTCCCCTTCCCTCCCCTTCTCTTCCCCCTCTTCCCCCTTCC
TCCTCCTTTCCCCCCTCCCTCCCTCTCCCCTTCCTCCTCTCTCCTCCCTC
TCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_n04.b1 MSMg01no123_n04.b1 CHROMAT_FILE:
MSMg01no123_n04.b1 PHD_FILE: MSMg01no123_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:04 2005
         (333 letters)



>mm_chr15_20417848_20418581
          Length = 734

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcgcttcaaagcatcttgctaatgaataagtaaataaaggcaaatatattccaagaa 60
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcatcacttcaaagcatcttgctaatgactaagtaaataaaggcaaatatattccaagaa 260

                                                                       
Query: 61  attgggcagtgcaaccatgtccctatttacatctttcaattctttggtgattactatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 attgggcagtgcaaccatgtccctatttacatctttcaattctttggcgattactatcaa 320

                                                                       
Query: 121 catactactc-atttaatggaaatgtaacctaaactcctaacatcatgcgtggaataaca 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catactactccatttaatggaaatgtaacctaaactcctaacatcatgcgtggaataaca 380

                                                                       
Query: 180 cccagaaaattcctgcaaaataacaggagaattaaatgattgtaggtcaaagcattattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagaaaattcctgcaaaataacaggagaattaaatgattgtaggtcaaagcattattt 440

                                                                       
Query: 240 gctctaggatgtgttgttttctaattttatatattgttactgatattgtatccttgaaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctaggatgtgttgttttctaattttatatattgttactgatattgtatccttgaaat 500

                                             
Query: 300 tcaggactgaatgtattagtctttttttaatact 333
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaggactgaatgtattagtctttttttaatact 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)