Query= MSMg01no124_a17.b1 MSMg01no124_a17.b1 CHROMAT_FILE:
MSMg01no124_a17.b1 PHD_FILE: MSMg01no124_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:36 2005
(583 letters)
>mm_chr15_90003722_90004707
Length = 986
Score = 1058 bits (547), Expect = 0.0
Identities = 576/589 (97%), Gaps = 9/589 (1%)
Strand = Plus / Minus
Query: 1 gaatgaaggtatacagggaggaccagcccc--gt-aagtggtacatcaaatgtttccctt 57
|||||||||||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct: 786 gaatgaaggtatacagggaggaccag---catgtaaagcggtacatcaaatgtttccctt 730
Query: 58 cctcttaagtatattcaaattcctgtgaggtaggattcgctcttctgttttggtcctttg 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cctcttaaatatattcaaattcctgtgaggtaggattcgctcttctgttttggtcctttg 670
Query: 118 tggttcctcatgatgtgagctatgtagcatgttcagacatcctcataaaagtatgactgt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tggttcctcatgatgtgagctatgtagcatgttcagacatcctcataaaagtatgactgt 610
Query: 178 cttgaggataaggcagctcttatttagcaccacgtttctatcacttgaagatagtttctc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 609 cttgaggataaggcagctcttatttagcaccacgtttctatcacttgaagatggttcctc 550
Query: 238 aaggagcttatctaacgggaaaggtgagaataatccctggagtacaagaaaatattttat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaggagcttatctaacgggaaaggtgagaataatccctggagtacaagaaaatattttat 490
Query: 298 aagagaaatcagcaccatggaattccaggagaactaaaacgtattttttatttggatcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aagagaaatcagcaccatggaattccaggagaactaaaacgtattttttatttggatcaa 430
Query: 358 gagttttagtaaaggaagtagcatttgacatacctcttgaaggactatagatttttcaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gagttttagtaaaggaagtagcatttgacatacctcttgaaggactatagatttttcaga 370
Query: 418 tagagaagttgaaagaaagccatttctagttttg---aaaaaaaaaaagcatgagtgtca 474
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 369 tagagaagttgaaagaaagccatttctagttttgaaaaaaaaaaaaaagcatgagtgtca 310
Query: 475 tgtagcagctttttcctttggatataacatgatgccctcttgggctttgcccctgattgc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgtagcagctttttcctttggatataacatgatgccctcttgggctttgcccctgattgc 250
Query: 535 catagcaactagagcagaacaatcaatgctatccaggtccatggtaaca 583
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catagcaactagagcagaacaatcaatgctatccaggtccatggtaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 986
Length adjustment: 10
Effective length of query: 573
Effective length of database: 976
Effective search space: 559248
Effective search space used: 559248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_a17.g1 MSMg01no124_a17.g1 CHROMAT_FILE:
MSMg01no124_a17.g1 PHD_FILE: MSMg01no124_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:36 2005
(519 letters)
>mm_chr15_89898957_89899874
Length = 918
Score = 895 bits (463), Expect = 0.0
Identities = 496/507 (97%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 1 ttgactgatgtacaatgcatggacattaacggctgttgaacaaaccatgggaaggagtta 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgactaatgtacaatgcatggacattaacggctgttgaacaaaccatgggaaggagtta 260
Query: 61 gggaccaatgaatcttgttattcacgccacacaagtcacctccactcattttgtgctgtc 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagaaatgaatcttgttattcacgccacacaagtcacctccactcattttgtgctgtc 320
Query: 121 aaagccagttgcacagaaattcaagtagtcacaagcctaaaacttttcagttattttctc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aaagccagttgcacagaaattcaagtagtcacaagcctaaaactcttcagttattttctc 380
Query: 181 ttcacacaagtcttcactattctgtcacctgaaattgcacactgagctgagctgagccga 240
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 381 tccacacaagtcttcactattctgtcacctgaaattgcacgctgagctgagctgagctga 440
Query: 241 gctttgagatagtgcacatgtaacacacgagagcaacaagcaatgttacttctcatttta 300
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 441 gctttgagatagtgcacatgtaacacactagagcaacaagcaatgg-acttctcatttta 499
Query: 301 aagtccctgatactttgtggctttatgtaaatgttgaatctataatagtctacctagaca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 aagtccctgatactttgtggctttatgtaaatgttgaatctatagtagtctacctagaca 559
Query: 361 tatcctagtatgaaaagatcttctacagaccataaattatttactttccctttaactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatcctagtatgaaaagatcttctacagaccataaattatttactttccctttaactgaa 619
Query: 421 aagagtttggtatcttgtgtccagggaattttcagaactaaatgttaggaacataatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagagtttggtatcttgtgtccagggaattttcagaactaaatgttaggaacataatttt 679
Query: 481 aaaatgacttcacatttgaactagagt 507
|||||||||||||||||||||||||||
Sbjct: 680 aaaatgacttcacatttgaactagagt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
