BAC Information

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BAC

Clone NameMSMg01-124F24
Chromosome15 (Build37)
Map Location 18,963,064 - 18,963,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666835, LOC666839, Cdh10
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124F24.T7 (MSMg01no124_f24.b1)MSMg01-124F24.TJ (MSMg01no124_f24.g1)
ACCAG333745AG333746
length1,2721,216
length of high quality
(start - end)
268 (130 - 397)436 (116 - 551)
definitionCHROMAT_FILE: MSMg01no124_f24.b1 PHD_FILE: MSMg01no124_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:23 2005CHROMAT_FILE: MSMg01no124_f24.g1 PHD_FILE: MSMg01no124_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTTATTTNNNNAACATTTGTCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTACCATAAGGCAGCCCTCTTCAAAGCCCCAGTTGTTTTTA
CGTTGTGGCCAGAGCCCTTTGATTAAGCGACATTGTGATGGTTTCCACAA
CTGGAATAGATTTGAAGTGTGAGGTGTTAAAGCAACCTCGGCTGTCATCA
TGACATTTCCCTGGAACATGGAAAAGGCAGTAGTTTGATTGACAACTTCC
CTATTTTCCATTAAAGCTGCTTGACTAAAATTCAGTTGAAGCAACACTTG
GTGGGATTCTAGAAGTGGTACAGTGTTGCCCAGCCAGGATCTCAGGACTG
TGGGAATTACAGTAATGACTTCTTGATCTGACCTGAGACTCTGAGACTCT
GCCTTACTTGGGGCAGTTGCTCTTGTGCCGCAGTACAGGGCTGTTAACTA
TTGTTATTTTGTTCCCCCCCCTGCTTGCTGTCATCACACTTGACAGATGG
AGCCTTTATAAAAGAAGACACAATGTTAAAAGCTTGCCCACGTCCAATGT
AGCATTAATATACCACTATGAATAAATTCTGTCCAGTGATTAACCCATTG
CCAGTGCCCTCAGAGGGAAAATGATATAATCCAACAAGTTCCAAGTTTAT
CTACATCTATCTGCGTTGCTGTACGCACTACAAAGCATAACACCCACTTT
GGAGGAAAATCTGGTAACTTCTGACAAAATGAAATCAAGTTTCCCTTATG
AACTCGCCTGGATAAAAAGCCACCGGATTCTTTTAAAACACACTCCATGC
TAAATCATGCTTTTGCTATATTGTGAAAAATTTGCTCTATATTAAATTAA
TCTATTTTTACTGTGTCTTGCATTTGTTGCACACTCCCTCTTTTAACTAA
TCAAACCCTTCTCTCTTAATACCCTTCTACTCCTCTCCCCGTCGTCGTGA
ATTATCTTTATATCGTCGTCTAAACCCCAAAAATTTCTTATACTCCTGTT
TATATTTCAAATCCCCTTGTAATTTTTTTGTTTAATCTTATAATATACCT
ACAATTGTACCTCTCCACAGATTCTTCCATCACATTTCTCCTTTTGCCCC
AATATCAATTCTTACTGTGTCTCAATTTTATAACTCCCTATCGTCCTTCT
GAAAATATCTCAAACCCATCCTCTCTCTCCCCTCTCGATAGCTTATATAG
CCCGTCATTATATCTCTTCTGCATTCTTCAANGATGCTTTCTTTCCATAT
ATACTTCCTCTCTCTATATATN
CCATGCGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCTTTTAACCTGAGGAATACCGAATGGCAGAGAAGNACCT
GCCCTAATGTTCCACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTGCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGC
GGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCACTACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGTTAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAACGGATGGACCCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATCA
GCCCCAAACCTAGGATACCCCAGATATAAGATACAATTTCCTAAACACCT
GAAACTCATGAAAAATGAAGACCGAAGTGTGGACCCCTATGCCCCTCCTT
ACAAGTGGGAAACAAACCACCCTTGGAAGGAGTTACAGAAACCCACGTTT
GGAGCTGAAATGAAAGGATGGACCCCGTAAAGACTACCCTATCCCAGGGA
CTCCCCCCCCTTAATTCAGCACCCAAACCCTGAACCCCTTGCCTAACCTT
ACCAAGATTTTTATCCAAAAGGACCCCACATGGAACCTGTCCTCCTTGGG
AAAACTATGCCCCGGCCCCTAACCAACCCCACAAAGTGGCATGCCTTCCC
CGTCCTCCTAAGGGAATGGAATTCACCCGTCCTCCCCAAGGGAAAGAATC
CTGGCAAAAAATTTACTCCCCGGGAAGCTTAAAGGGGATTTCTTGCCCCC
CCTATTAGTTGGGAATTCACTCTTTTACCTAAAACTTATTTCCGTAACTC
CCCGGAAGACTCTCTTTGCAACCTAATGCTCTCCTCATATGTTATTCACC
ATACATAGTCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_f24.b1 MSMg01no124_f24.b1 CHROMAT_FILE:
MSMg01no124_f24.b1 PHD_FILE: MSMg01no124_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:23 2005
         (268 letters)



>mm_chr15_18962864_18963532
          Length = 669

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%), Gaps = 3/270 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgtgatggtttccacaactggaatagatttgaagtgtgaggtgttaaagcaacctc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 201 acattgtgatggtttccacaactggaatagatctgaagtgtgaggtgttaaagcaacctt 260

                                                                       
Query: 61  ggctgtcatcatgacatttccctggaacatgg-aaaaggcagtagtttgattgacaactt 119
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 261 ggctgtcatcatgacatttccctggaacatgggaaaag-cagtagtttgattgacaactt 319

                                                                       
Query: 120 ccctattttccattaaagctgcttgactaaaatt-cagttgaagcaacacttggtgggat 178
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 ccctattttccattaaagctgcttgactaaaattacagttgaagcaacacttggtgggat 379

                                                                       
Query: 179 tctagaagtggtacagtgttgcccagccaggatctcaggactgtgggaattacagtaatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctagaagtggtacagtgttgcccagccaggatctcaggactgtgggaattacagtaatg 439

                                         
Query: 239 acttcttgatctgacctgagactctgagac 268
           ||||||||||||||||||||||||||||||
Sbjct: 440 acttcttgatctgacctgagactctgagac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space:   170940
Effective search space used:   170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)