BAC Information

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BAC

Clone NameMSMg01-124L13
Chromosome15 (Build37)
Map Location 64,266,349 - 64,266,591
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124L13.T7 (MSMg01no124_l13.b1)MSMg01-124L13.TJ (MSMg01no124_l13.g1)
ACCAG334003AG334004
length1,1731,290
length of high quality
(start - end)
243 (56 - 298)54 (118 - 171)
definitionCHROMAT_FILE: MSMg01no124_l13.b1 PHD_FILE: MSMg01no124_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:11 2005CHROMAT_FILE: MSMg01no124_l13.g1 PHD_FILE: MSMg01no124_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAAGGGACGGAGAGGCTGTCAGCAACACAGAAGGAGCCCTTTAAGAGC
CCATGTGGGGACTGAGCTTCTAATTTGCATAGCTGTGTGGAACTCAGAAA
GCCTCCTCCAAAGCCCTTTGCACCATCACCCTGCAAGAAGAGGCCTGTTT
TCAGTCAGGGCTTGAAGGTGGCAGGGAAATCAAGCTAGGAATTGAACATG
GACTGAGAGACTCTTGCTGGGCAGCAACAAGTGCTTCCTTGGAAAACAGG
AGGAGCCAGGAGAAGGGAAGTAGAAAAATGCAGAGGCAAAGGATAAGCAA
GACAGAGAGACTGTTTAGATGGTATGCTCCTCTTTTTATCAGTGGTCCTA
GATAGGCTACACTACAGGGCATCAGGATATGGTGCCTTTTTGCGTTACTA
GCATGCTAAGACAGTGCTAGGATGCTAGCATGGCCTTATACCATGGTCCT
CATCATAGTAGTGTCAAAATTCGTTTTGTACACTAAATATAACTATGACA
CCCATCTTTATCTCACACTCCATGTCTGATGTTAAAAGAAGACCCTATCA
GTTTCTACCTCCTAAATACACCCAGAATTTGACCAGATCATGTCTCCCTG
CCCCACGCTTGATTCTGGCTGCTTTCAGCCTCCAAATGTACCCTCTCTGG
GATAGTTAGTATGTTTCCTTTCGAGCCTCCGTTTCCATGCTTGCTGTTTA
CAGCCTGTTTGGTCTACCCCAGTGATCTGCTTTAAAGCCCATTCCAGTTG
CTCTGCCTAACTCTTTTTCCACGTTTCATGATTTGCCCTTATCGAAACTT
CCTACTTTCCCCCGTTTTACTATCTTTTAACTGCACTTTTGCTTGTCACT
TCTTTGATACTATTACTTCTTTCCACCTGCCATTTCCCTTCCCTTGGGTC
CTCTTTATACTTTCATGTGCTCTCTAAAATCTTGTTCTCTGTTATTCGTT
AATTTCCTTTTTCTTCTGTCTAAACCTGTTTCTTCCCCTTCTTCTTCATG
CGTCTTCTTTACTTTGCTCTCTTATACTCCTTGTGTGTTGGTAATCTTCG
GTCCTCCGCCTCACTTCGTACATCTGTTTTTCAAAATTCCCCTTCTTTCT
CGTTGTAACCTAAATTCTTCTCTTTCAATCGAATTTTCCTTATCCTCCTG
TATCTTATCCTTTTCTTATTCTG
CCAAGGCAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCCTTTTAAGATCAGATTTGCTGCTGGGAGGATCCAGTCA
GTCCTTTAAAGGCCCGTAAAGTGCCTAAATTTATACAACATGAGAGCACG
CACTTAGTCCTGCTGCTGAGACATGTCCCCGCCAGAACAGGTCGGTACCC
ATGGGCTGCTTCCCCCTCTCTAAGGAGAAAGGCGGGAGATGGGGGAAGGG
GGCTATGAGGGTGGGACTGGGAGAAGAAGAAAAAGGAGGACTGTGATTGG
GGTTGTACTAGCTGGTTTTATATGTCAACTTGACACAAGCTGGAATTATC
ACAGAGAAAGGAGCCTCCCTTGAGGAAATGCCTCCATAAGACCTTTTTTT
AAGGCATTTTCTCAACTAGTGATCAAGGATGGGAGAGCCCATTGTGTTTT
TTTCCCTCCCGGAGCTGGTATTCCTAGCTTCTATAAAAAAGTAGGCTATC
TAGTAAACAGCATCCTTTCATGGCTTCTGCATCAGCTCCTGCTTCCAGGT
TCCTACCCTGTGTGAGCCCCACGCCTGACTTCCTTTGGTGATGAACAGTA
ATGTGAAAGAGTATTCTCAATATATCCTTTCCTCCCCAACTTGCTTCTTG
GTTATGATGTTTTGTGCATTAATACAAACCCTGACTAATACCGAAATGTG
AAGTGAATTTTAATAAATCTATAACTATTGAACGAAAGAAAAGAGATTCC
TTCTTAACCCTATTTTTTCTTCACTTTTATCTCTTAATTTATGATTTCTC
TTATTCTCTTATCTAATGTACTTCTTTCTTTTATCTTACTTTTCTTTTTT
TTTTTTGATTTTATTTCTCTTTTCCTCTATTCTTTCTTTTTTATTTTTTC
TTTTTTTTTTTTTCTTCTCTTTATCTTTACTATTCTTATTATCTTTGTTT
TTCTTTCTTTTTTTATTTCTATCTTTATTCTTTTTTTATCTCTTATTTAA
TATCTTTTTTCTTTTTATTTCATTTTTCCTGCATTTCTTTCTTCTTTTAC
TATTCTCCTCTTTTTCTTTCTATTTCCTTCCTTATCATACTTTTATCCTT
CTATTAATTTCTCTACACTTTATTTTCTTTTGTTTCATTATCTCTCTTTT
TTTTACTTTTATTTATCATCTCTCTTCTTATTACTTCATTTTTTTCTATT
TTTCATTACTTCTACCTTTTTTCTTCATTATCTTCCATCTCTGTATTCTT
TATACGCATTCTCTTTCTATCATCTATATTCCTTCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_l13.b1 MSMg01no124_l13.b1 CHROMAT_FILE:
MSMg01no124_l13.b1 PHD_FILE: MSMg01no124_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:11 2005
         (243 letters)



>mm_chr15_64266149_64266791
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggactgagcttctaatttgcatagctgtgtggaactcagaaagcctcctccaaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 201 tggggactgagcttctaatttgcatagctgtgtggaactcagaaagcctcctccaaagtt 260

                                                                       
Query: 61  ctttgcaccatcaccctgcaagaagaggcctgttttcagtcagggcttgaaggtggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcaccatcaccctgcaagaagaggcctgttttcagtcagggcttgaaggtggcagg 320

                                                                       
Query: 121 gaaatcaagctaggaattgaacatggactgagagactcttgctgggcagcaacaagtgct 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gaaatcaagctaggaattgaacatggactgagagactcttgctggggagcaacaagtgct 380

                                                                       
Query: 181 tccttggaaaacaggaggagccaggagaagggaagtagaaaaatgcagaggcaaaggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttggaaaacaggaggagccaggagaagggaagtagaaaaatgcagaggcaaaggata 440

              
Query: 241 agc 243
           |||
Sbjct: 441 agc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)