BAC Information

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BAC

Clone NameMSMg01-125L22
Chromosome15 (Build37)
Map Location 66,830,331 - 66,830,534
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667
Downstream geneSt3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125L22.T7 (MSMg01no125_l22.b1)MSMg01-125L22.TJ (MSMg01no125_l22.g1)
ACCAG334754AG334755
length727714
length of high quality
(start - end)
204 (78 - 281)---
definitionCHROMAT_FILE: MSMg01no125_l22.b1 PHD_FILE: MSMg01no125_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005CHROMAT_FILE: MSMg01no125_l22.g1 PHD_FILE: MSMg01no125_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAAAGGGCGGAAT
TCAGGGCAGCTTTCCTTAAAAAAGGAGTAACCTGACTTCTAATTGCATCA
TCCGGCATGGCTATACTGGAATATCCGAAGACTCATATATGTGTGCACTG
CAAATCATTTCGACTTCTATTTCTCTTTACATGTGAAAGCTTGAGCATGC
TATATGTCATTGTAAGACTACATGCCTAAGAACATCATACTCTACAATTC
TGGTTGCCATCAAGGACATATGAAGGGACATGGGGCGACTAGTGTTAGGT
TTTCTCCAGGATATACACAGGCCATTTTATGAAGCTTGCCTTTTATATGG
ATTGGGAGAGTTTCAGACAGGTAAACACCCCTTAGAGGAATTACTCTTCC
CAATTGCCTCCCTGACCTTTGAACTACTCTTTCATCTGCCCTAATAGGCA
ACATCCATACTTTCTAGTTTTGTTTAGTGTATATTTCTTGTATCAAAGAG
TGTGCTTCATGATAACATTTGCTTGTACGTACATCACATCTCTCCCCTAC
CTCCCTTCTCTCCTCCAGCTGGCCCATGCCCCCATTCTCCAATACCTATC
CAGCTGCCTTCCTGGCTTTTTTCTGCCTCTCAACCCCATGCTCGAAACAT
AACATGCGGCATTCTTTTATTTCCCCTTAATGCCAGATTTACATATCCCC
CTTGCTTTCCCGCCAGAATGATGACTT
TCCAGCGAGAGGCCGGNGNNNNCCGCTTTCCCCACCGCCNGAANGANAGA
AGGTTTTCCCCCACCGCAGGNNNGGNANAGAGAGNAAANANNCNNCANAC
CCAAGNCGCNCAACCCCCCAGACGCAGAAGNAGCCAAAACCAGCCCCCCN
NCACACAAAGAACCCAACGCGCAAAGCCACGGCAACACAGACGAAACCCA
AACACCACCCCNCAAGAAGNCCCCGGCNAGACGCNCACNCNAAACAGACT
TTTCGAAACAGACCCAAAAAACACCCACCCCCAACGCCAAAACCGACAGG
ACAAGCCAACAAAAGTTTGTCCTTTTAGCAAAAGAACAAGGAGAACCACA
AACGGCGAGGGCCCCCCCCCCCCCCGAAACAACAAAACGGGGAAAGGAAG
GGAACACCACAGCCACANNCCCCCACAGAAAGACCGCACCCACCCGAAGG
GCAAACCCACCCCCGCAGGAAACAGACACCGAAAAGCAAGCCAGCCCCAA
CCCCGCCACAAACGACCAAAAGAACACCCCACCCCAAAGGCGACACCGCC
CAACCACAGCCCACCCCAGCCCAAACCAAACCACGGAANGAACCAGACAC
CACCCAGCCAGCCACGGAGCCAAGGAGAAGGCCCAAACAAGCCGACCCCC
ACACCACAGGCTTTTTTTTTTTCTGAACCGACGAATTACCACGCTTTCCG
TTCCGGCTGTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_l22.b1 MSMg01no125_l22.b1 CHROMAT_FILE:
MSMg01no125_l22.b1 PHD_FILE: MSMg01no125_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:53 2005
         (204 letters)



>mm_chr15_66830131_66830734
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 203/204 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacctgacttctaattgcatcatccggcatggctatactggaatatccgaagactcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacctgacttctaattgcatcatccggcatggctatactggaatatccgaagactcata 260

                                                                       
Query: 61  tatgtgtgcactgcaaatcatttcgacttctatttctctttacatgtgaaagcttgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgtgcactgcaaatcatttcgacttctatttctctttacatgtgaaagcttgagca 320

                                                                       
Query: 121 tgctatatgtcattgtaagactacatgcctaagaacatcatactctacaattctggttgc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tgctatatgtcattgtaagactacatgcctaagaagatcatactctacaattctggttgc 380

                                   
Query: 181 catcaaggacatatgaagggacat 204
           ||||||||||||||||||||||||
Sbjct: 381 catcaaggacatatgaagggacat 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)